miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28014 3' -54.5 NC_005887.1 + 35872 0.71 0.394793
Target:  5'- ----cUCGGCAGACACCgcGACGcCGCGc -3'
miRNA:   3'- gcuucAGCCGUCUGUGG--CUGUaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 26205 0.71 0.404076
Target:  5'- aCGggG-CGGCGGugGCCGGCcugcagcuggCGCa -3'
miRNA:   3'- -GCuuCaGCCGUCugUGGCUGua--------GCGc -5'
28014 3' -54.5 NC_005887.1 + 5686 0.71 0.413496
Target:  5'- uGAGGacuaccagcUCGGC-GACACCGAUuUCGCa -3'
miRNA:   3'- gCUUC---------AGCCGuCUGUGGCUGuAGCGc -5'
28014 3' -54.5 NC_005887.1 + 5235 0.71 0.423051
Target:  5'- aCGAGccuGUCGcuGCAGAuCACCGACAugUCGCu -3'
miRNA:   3'- -GCUU---CAGC--CGUCU-GUGGCUGU--AGCGc -5'
28014 3' -54.5 NC_005887.1 + 25952 0.69 0.525161
Target:  5'- aCGguGgccCGGCAGACGCCGAgCAUCuucgacacuucgGCGa -3'
miRNA:   3'- -GCuuCa--GCCGUCUGUGGCU-GUAG------------CGC- -5'
28014 3' -54.5 NC_005887.1 + 12657 0.69 0.524089
Target:  5'- aCGAgugGGUCGGCGauuuGcCGCCGACGaagcuuaUCGCGu -3'
miRNA:   3'- -GCU---UCAGCCGU----CuGUGGCUGU-------AGCGC- -5'
28014 3' -54.5 NC_005887.1 + 13508 0.7 0.462545
Target:  5'- aCGAGGUC-GCcGGCACgGGCAUgCGCGc -3'
miRNA:   3'- -GCUUCAGcCGuCUGUGgCUGUA-GCGC- -5'
28014 3' -54.5 NC_005887.1 + 17844 0.7 0.452487
Target:  5'- ----aUCGGUgGGGCACCGACAaccUCGCGa -3'
miRNA:   3'- gcuucAGCCG-UCUGUGGCUGU---AGCGC- -5'
28014 3' -54.5 NC_005887.1 + 13313 0.71 0.442549
Target:  5'- aGgcGuUCGGCA-ACGCCGgccGCAUCGCGg -3'
miRNA:   3'- gCuuC-AGCCGUcUGUGGC---UGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 9561 0.67 0.624096
Target:  5'- uGAAG-CGGCGcGCGCCGAUccugCGCa -3'
miRNA:   3'- gCUUCaGCCGUcUGUGGCUGua--GCGc -5'
28014 3' -54.5 NC_005887.1 + 12176 0.67 0.657534
Target:  5'- gGAAGcugcaGGCGuuccgcgacuucGACGCCGGCAUCgGCGc -3'
miRNA:   3'- gCUUCag---CCGU------------CUGUGGCUGUAG-CGC- -5'
28014 3' -54.5 NC_005887.1 + 15079 0.67 0.665315
Target:  5'- gGAAGUCGuGCcGAUcauuggcgacgcggGCCGGCG-CGCGa -3'
miRNA:   3'- gCUUCAGC-CGuCUG--------------UGGCUGUaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 8422 0.67 0.668646
Target:  5'- gCGccGUCGGCAGG--UCGACGUCGa- -3'
miRNA:   3'- -GCuuCAGCCGUCUguGGCUGUAGCgc -5'
28014 3' -54.5 NC_005887.1 + 1400 0.67 0.668646
Target:  5'- cCGAagcGGUCGaGCAuGCGCuCGGCGUUGCc -3'
miRNA:   3'- -GCU---UCAGC-CGUcUGUG-GCUGUAGCGc -5'
28014 3' -54.5 NC_005887.1 + 27220 0.67 0.668646
Target:  5'- uGggGUCGGUcggguccguGACGCCGuACuugCGCa -3'
miRNA:   3'- gCuuCAGCCGu--------CUGUGGC-UGua-GCGc -5'
28014 3' -54.5 NC_005887.1 + 40547 0.66 0.684141
Target:  5'- -cAGGUCGGCGGcACguccuucggguagcgGCCGACG-CGCa -3'
miRNA:   3'- gcUUCAGCCGUC-UG---------------UGGCUGUaGCGc -5'
28014 3' -54.5 NC_005887.1 + 25235 0.66 0.690753
Target:  5'- uCGgcGUCGuucaGCGGAUucCCGGCGUCGuCGa -3'
miRNA:   3'- -GCuuCAGC----CGUCUGu-GGCUGUAGC-GC- -5'
28014 3' -54.5 NC_005887.1 + 5915 0.66 0.701725
Target:  5'- cCGAAG--GGCaAGAaGCCGGCcgCGCGg -3'
miRNA:   3'- -GCUUCagCCG-UCUgUGGCUGuaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 26650 0.66 0.712628
Target:  5'- aCGccGgCGGCGGAaucauCCGGCcgCGCGg -3'
miRNA:   3'- -GCuuCaGCCGUCUgu---GGCUGuaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 32705 1.09 0.000944
Target:  5'- uCGAAGUCGGCAGACACCGACAUCGCGa -3'
miRNA:   3'- -GCUUCAGCCGUCUGUGGCUGUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.