miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28014 3' -54.5 NC_005887.1 + 35108 0.69 0.540249
Target:  5'- cCGAGGUCGaugauauuggucgauGCGcccGACGCCGACAgCGCc -3'
miRNA:   3'- -GCUUCAGC---------------CGU---CUGUGGCUGUaGCGc -5'
28014 3' -54.5 NC_005887.1 + 6669 0.68 0.579656
Target:  5'- gCGAAGcCGGC---CGCCGAUcgCGCGc -3'
miRNA:   3'- -GCUUCaGCCGucuGUGGCUGuaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 10550 0.7 0.452487
Target:  5'- uGAGGUuggaugcggCGGCAGAcCACUGGC-UCGCa -3'
miRNA:   3'- gCUUCA---------GCCGUCU-GUGGCUGuAGCGc -5'
28014 3' -54.5 NC_005887.1 + 11387 0.7 0.493398
Target:  5'- gCGAAGUUccucacguacGCGGGCGCCGACAUCa-- -3'
miRNA:   3'- -GCUUCAGc---------CGUCUGUGGCUGUAGcgc -5'
28014 3' -54.5 NC_005887.1 + 25379 0.68 0.579656
Target:  5'- cCGuAGUCGaGCu--CGCCGACAUUGCc -3'
miRNA:   3'- -GCuUCAGC-CGucuGUGGCUGUAGCGc -5'
28014 3' -54.5 NC_005887.1 + 32705 1.09 0.000944
Target:  5'- uCGAAGUCGGCAGACACCGACAUCGCGa -3'
miRNA:   3'- -GCUUCAGCCGUCUGUGGCUGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 7281 0.68 0.601823
Target:  5'- uCGAAGUCGcGCc--CGCCGACGacggcagcgaccUCGCGu -3'
miRNA:   3'- -GCUUCAGC-CGucuGUGGCUGU------------AGCGC- -5'
28014 3' -54.5 NC_005887.1 + 37844 0.68 0.601823
Target:  5'- cCGuAGUCGGCgagcAGACGCgCGAUG-CGCGc -3'
miRNA:   3'- -GCuUCAGCCG----UCUGUG-GCUGUaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 27057 0.68 0.568636
Target:  5'- uCGAGGUaugCGGCAGucucguuCGCCGGCGgacgcUCGCc -3'
miRNA:   3'- -GCUUCA---GCCGUCu------GUGGCUGU-----AGCGc -5'
28014 3' -54.5 NC_005887.1 + 15593 0.66 0.690753
Target:  5'- cCGAAGcUGagacGCAGcGCACgGGCGUCGCGc -3'
miRNA:   3'- -GCUUCaGC----CGUC-UGUGgCUGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 33138 0.68 0.568636
Target:  5'- ---cGUCGGUAGAagcaGCCGACcgUGCc -3'
miRNA:   3'- gcuuCAGCCGUCUg---UGGCUGuaGCGc -5'
28014 3' -54.5 NC_005887.1 + 13186 0.69 0.535923
Target:  5'- gGAgcGGUCGaGCAGGCcgccgGCCGACguguGUCGCu -3'
miRNA:   3'- gCU--UCAGC-CGUCUG-----UGGCUG----UAGCGc -5'
28014 3' -54.5 NC_005887.1 + 25952 0.69 0.525161
Target:  5'- aCGguGgccCGGCAGACGCCGAgCAUCuucgacacuucgGCGa -3'
miRNA:   3'- -GCuuCa--GCCGUCUGUGGCU-GUAG------------CGC- -5'
28014 3' -54.5 NC_005887.1 + 12558 0.67 0.668646
Target:  5'- uGgcGUCGaCGGcCGCCGGCAUgCGCa -3'
miRNA:   3'- gCuuCAGCcGUCuGUGGCUGUA-GCGc -5'
28014 3' -54.5 NC_005887.1 + 5686 0.71 0.413496
Target:  5'- uGAGGacuaccagcUCGGC-GACACCGAUuUCGCa -3'
miRNA:   3'- gCUUC---------AGCCGuCUGUGGCUGuAGCGc -5'
28014 3' -54.5 NC_005887.1 + 11393 0.67 0.668646
Target:  5'- cCGGAGcgcuggCGGCcGGCGCCGccaagGCAUCGUc -3'
miRNA:   3'- -GCUUCa-----GCCGuCUGUGGC-----UGUAGCGc -5'
28014 3' -54.5 NC_005887.1 + 3686 0.66 0.679723
Target:  5'- aGAAGUCGGCGaucuucuaccACGCCGucgaGCcgCGCGc -3'
miRNA:   3'- gCUUCAGCCGUc---------UGUGGC----UGuaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 10158 0.66 0.679723
Target:  5'- gCGAcGUcuaCGGCuGGCAUCGGCAUC-CGg -3'
miRNA:   3'- -GCUuCA---GCCGuCUGUGGCUGUAGcGC- -5'
28014 3' -54.5 NC_005887.1 + 26205 0.71 0.404076
Target:  5'- aCGggG-CGGCGGugGCCGGCcugcagcuggCGCa -3'
miRNA:   3'- -GCuuCaGCCGUCugUGGCUGua--------GCGc -5'
28014 3' -54.5 NC_005887.1 + 18371 0.66 0.690753
Target:  5'- gCGuAGaCGGC--GCGCCGGCGcUCGCGa -3'
miRNA:   3'- -GCuUCaGCCGucUGUGGCUGU-AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.