miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28014 3' -54.5 NC_005887.1 + 18548 0.73 0.325668
Target:  5'- --cGGUgGGCGGcgGCGCCGGCuUCGCGg -3'
miRNA:   3'- gcuUCAgCCGUC--UGUGGCUGuAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 30149 0.73 0.302167
Target:  5'- -cAAGUCGGCGccGAUGCCGGCgucgaaGUCGCGg -3'
miRNA:   3'- gcUUCAGCCGU--CUGUGGCUG------UAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 13186 0.69 0.535923
Target:  5'- gGAgcGGUCGaGCAGGCcgccgGCCGACguguGUCGCu -3'
miRNA:   3'- gCU--UCAGC-CGUCUG-----UGGCUG----UAGCGc -5'
28014 3' -54.5 NC_005887.1 + 33138 0.68 0.568636
Target:  5'- ---cGUCGGUAGAagcaGCCGACcgUGCc -3'
miRNA:   3'- gcuuCAGCCGUCUg---UGGCUGuaGCGc -5'
28014 3' -54.5 NC_005887.1 + 15593 0.66 0.690753
Target:  5'- cCGAAGcUGagacGCAGcGCACgGGCGUCGCGc -3'
miRNA:   3'- -GCUUCaGC----CGUC-UGUGgCUGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 10158 0.66 0.679723
Target:  5'- gCGAcGUcuaCGGCuGGCAUCGGCAUC-CGg -3'
miRNA:   3'- -GCUuCA---GCCGuCUGUGGCUGUAGcGC- -5'
28014 3' -54.5 NC_005887.1 + 3686 0.66 0.679723
Target:  5'- aGAAGUCGGCGaucuucuaccACGCCGucgaGCcgCGCGc -3'
miRNA:   3'- gCUUCAGCCGUc---------UGUGGC----UGuaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 11393 0.67 0.668646
Target:  5'- cCGGAGcgcuggCGGCcGGCGCCGccaagGCAUCGUc -3'
miRNA:   3'- -GCUUCa-----GCCGuCUGUGGC-----UGUAGCGc -5'
28014 3' -54.5 NC_005887.1 + 12558 0.67 0.668646
Target:  5'- uGgcGUCGaCGGcCGCCGGCAUgCGCa -3'
miRNA:   3'- gCuuCAGCcGUCuGUGGCUGUA-GCGc -5'
28014 3' -54.5 NC_005887.1 + 35069 0.67 0.657534
Target:  5'- cCGucGUCGGCGGGCG-CGACuUCGa- -3'
miRNA:   3'- -GCuuCAGCCGUCUGUgGCUGuAGCgc -5'
28014 3' -54.5 NC_005887.1 + 6498 0.67 0.628557
Target:  5'- gGAAGUUGcGCAGACGCUGuucuacggcaaugacGgCAUCGCc -3'
miRNA:   3'- gCUUCAGC-CGUCUGUGGC---------------U-GUAGCGc -5'
28014 3' -54.5 NC_005887.1 + 34684 0.67 0.667536
Target:  5'- aCGuuGUCGagcagcaGCGGGCgGCCGuCGUCGCGc -3'
miRNA:   3'- -GCuuCAGC-------CGUCUG-UGGCuGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 27601 0.67 0.624096
Target:  5'- uCGAGcGUCGuGUcgaAGGCGCUGAUaccGUCGCGg -3'
miRNA:   3'- -GCUU-CAGC-CG---UCUGUGGCUG---UAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 22727 0.68 0.612951
Target:  5'- gCGAGaUCGGCgGGACACUG-C-UCGCGa -3'
miRNA:   3'- -GCUUcAGCCG-UCUGUGGCuGuAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 2173 0.68 0.601823
Target:  5'- gGAcuUCGGCcuGACGCCGGC--CGCGg -3'
miRNA:   3'- gCUucAGCCGu-CUGUGGCUGuaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 41259 0.68 0.590722
Target:  5'- uCGgcGUCGGCAauGGCGCCGuCGaccugCGCa -3'
miRNA:   3'- -GCuuCAGCCGU--CUGUGGCuGUa----GCGc -5'
28014 3' -54.5 NC_005887.1 + 11120 0.68 0.590722
Target:  5'- gCGAAGcUGGCcgAGGCGCCGugGcggCGCa -3'
miRNA:   3'- -GCUUCaGCCG--UCUGUGGCugUa--GCGc -5'
28014 3' -54.5 NC_005887.1 + 39387 0.8 0.117071
Target:  5'- cCGAGGcCGGCGGcGCaACCGugGUCGCGa -3'
miRNA:   3'- -GCUUCaGCCGUC-UG-UGGCugUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.