Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28014 | 3' | -54.5 | NC_005887.1 | + | 6469 | 0.66 | 0.723449 |
Target: 5'- uGAAGUa--CGGGCG-CGGCGUCGCGg -3' miRNA: 3'- gCUUCAgccGUCUGUgGCUGUAGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 36055 | 0.69 | 0.546761 |
Target: 5'- uCGguGUgGGCAGACcggugcgaACCGACGU-GCGg -3' miRNA: 3'- -GCuuCAgCCGUCUG--------UGGCUGUAgCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 33643 | 0.69 | 0.533764 |
Target: 5'- aCGAAGcgcuuaccgccgCGGCGGAuCGCCGGgcccugcacCGUCGCGa -3' miRNA: 3'- -GCUUCa-----------GCCGUCU-GUGGCU---------GUAGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 32705 | 1.09 | 0.000944 |
Target: 5'- uCGAAGUCGGCAGACACCGACAUCGCGa -3' miRNA: 3'- -GCUUCAGCCGUCUGUGGCUGUAGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 40547 | 0.66 | 0.684141 |
Target: 5'- -cAGGUCGGCGGcACguccuucggguagcgGCCGACG-CGCa -3' miRNA: 3'- gcUUCAGCCGUC-UG---------------UGGCUGUaGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 27220 | 0.67 | 0.668646 |
Target: 5'- uGggGUCGGUcggguccguGACGCCGuACuugCGCa -3' miRNA: 3'- gCuuCAGCCGu--------CUGUGGC-UGua-GCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 8422 | 0.67 | 0.668646 |
Target: 5'- gCGccGUCGGCAGG--UCGACGUCGa- -3' miRNA: 3'- -GCuuCAGCCGUCUguGGCUGUAGCgc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 15079 | 0.67 | 0.665315 |
Target: 5'- gGAAGUCGuGCcGAUcauuggcgacgcggGCCGGCG-CGCGa -3' miRNA: 3'- gCUUCAGC-CGuCUG--------------UGGCUGUaGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 28329 | 0.68 | 0.612951 |
Target: 5'- ---cGcCGGCGGcGCGCCGGCgGUUGCGg -3' miRNA: 3'- gcuuCaGCCGUC-UGUGGCUG-UAGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 27057 | 0.68 | 0.568636 |
Target: 5'- uCGAGGUaugCGGCAGucucguuCGCCGGCGgacgcUCGCc -3' miRNA: 3'- -GCUUCA---GCCGUCu------GUGGCUGU-----AGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 7281 | 0.68 | 0.601823 |
Target: 5'- uCGAAGUCGcGCc--CGCCGACGacggcagcgaccUCGCGu -3' miRNA: 3'- -GCUUCAGC-CGucuGUGGCUGU------------AGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 9561 | 0.67 | 0.624096 |
Target: 5'- uGAAG-CGGCGcGCGCCGAUccugCGCa -3' miRNA: 3'- gCUUCaGCCGUcUGUGGCUGua--GCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 26650 | 0.66 | 0.712628 |
Target: 5'- aCGccGgCGGCGGAaucauCCGGCcgCGCGg -3' miRNA: 3'- -GCuuCaGCCGUCUgu---GGCUGuaGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 25379 | 0.68 | 0.579656 |
Target: 5'- cCGuAGUCGaGCu--CGCCGACAUUGCc -3' miRNA: 3'- -GCuUCAGC-CGucuGUGGCUGUAGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 5915 | 0.66 | 0.701725 |
Target: 5'- cCGAAG--GGCaAGAaGCCGGCcgCGCGg -3' miRNA: 3'- -GCUUCagCCG-UCUgUGGCUGuaGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 12176 | 0.67 | 0.657534 |
Target: 5'- gGAAGcugcaGGCGuuccgcgacuucGACGCCGGCAUCgGCGc -3' miRNA: 3'- gCUUCag---CCGU------------CUGUGGCUGUAG-CGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 6669 | 0.68 | 0.579656 |
Target: 5'- gCGAAGcCGGC---CGCCGAUcgCGCGc -3' miRNA: 3'- -GCUUCaGCCGucuGUGGCUGuaGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 35108 | 0.69 | 0.540249 |
Target: 5'- cCGAGGUCGaugauauuggucgauGCGcccGACGCCGACAgCGCc -3' miRNA: 3'- -GCUUCAGC---------------CGU---CUGUGGCUGUaGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 25235 | 0.66 | 0.690753 |
Target: 5'- uCGgcGUCGuucaGCGGAUucCCGGCGUCGuCGa -3' miRNA: 3'- -GCuuCAGC----CGUCUGu-GGCUGUAGC-GC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 1400 | 0.67 | 0.668646 |
Target: 5'- cCGAagcGGUCGaGCAuGCGCuCGGCGUUGCc -3' miRNA: 3'- -GCU---UCAGC-CGUcUGUG-GCUGUAGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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