miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28014 3' -54.5 NC_005887.1 + 1400 0.67 0.668646
Target:  5'- cCGAagcGGUCGaGCAuGCGCuCGGCGUUGCc -3'
miRNA:   3'- -GCU---UCAGC-CGUcUGUG-GCUGUAGCGc -5'
28014 3' -54.5 NC_005887.1 + 2173 0.68 0.601823
Target:  5'- gGAcuUCGGCcuGACGCCGGC--CGCGg -3'
miRNA:   3'- gCUucAGCCGu-CUGUGGCUGuaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 3686 0.66 0.679723
Target:  5'- aGAAGUCGGCGaucuucuaccACGCCGucgaGCcgCGCGc -3'
miRNA:   3'- gCUUCAGCCGUc---------UGUGGC----UGuaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 5235 0.71 0.423051
Target:  5'- aCGAGccuGUCGcuGCAGAuCACCGACAugUCGCu -3'
miRNA:   3'- -GCUU---CAGC--CGUCU-GUGGCUGU--AGCGc -5'
28014 3' -54.5 NC_005887.1 + 5686 0.71 0.413496
Target:  5'- uGAGGacuaccagcUCGGC-GACACCGAUuUCGCa -3'
miRNA:   3'- gCUUC---------AGCCGuCUGUGGCUGuAGCGc -5'
28014 3' -54.5 NC_005887.1 + 5915 0.66 0.701725
Target:  5'- cCGAAG--GGCaAGAaGCCGGCcgCGCGg -3'
miRNA:   3'- -GCUUCagCCG-UCUgUGGCUGuaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 6469 0.66 0.723449
Target:  5'- uGAAGUa--CGGGCG-CGGCGUCGCGg -3'
miRNA:   3'- gCUUCAgccGUCUGUgGCUGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 6498 0.67 0.628557
Target:  5'- gGAAGUUGcGCAGACGCUGuucuacggcaaugacGgCAUCGCc -3'
miRNA:   3'- gCUUCAGC-CGUCUGUGGC---------------U-GUAGCGc -5'
28014 3' -54.5 NC_005887.1 + 6669 0.68 0.579656
Target:  5'- gCGAAGcCGGC---CGCCGAUcgCGCGc -3'
miRNA:   3'- -GCUUCaGCCGucuGUGGCUGuaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 7281 0.68 0.601823
Target:  5'- uCGAAGUCGcGCc--CGCCGACGacggcagcgaccUCGCGu -3'
miRNA:   3'- -GCUUCAGC-CGucuGUGGCUGU------------AGCGC- -5'
28014 3' -54.5 NC_005887.1 + 8422 0.67 0.668646
Target:  5'- gCGccGUCGGCAGG--UCGACGUCGa- -3'
miRNA:   3'- -GCuuCAGCCGUCUguGGCUGUAGCgc -5'
28014 3' -54.5 NC_005887.1 + 9561 0.67 0.624096
Target:  5'- uGAAG-CGGCGcGCGCCGAUccugCGCa -3'
miRNA:   3'- gCUUCaGCCGUcUGUGGCUGua--GCGc -5'
28014 3' -54.5 NC_005887.1 + 10158 0.66 0.679723
Target:  5'- gCGAcGUcuaCGGCuGGCAUCGGCAUC-CGg -3'
miRNA:   3'- -GCUuCA---GCCGuCUGUGGCUGUAGcGC- -5'
28014 3' -54.5 NC_005887.1 + 10550 0.7 0.452487
Target:  5'- uGAGGUuggaugcggCGGCAGAcCACUGGC-UCGCa -3'
miRNA:   3'- gCUUCA---------GCCGUCU-GUGGCUGuAGCGc -5'
28014 3' -54.5 NC_005887.1 + 11120 0.68 0.590722
Target:  5'- gCGAAGcUGGCcgAGGCGCCGugGcggCGCa -3'
miRNA:   3'- -GCUUCaGCCG--UCUGUGGCugUa--GCGc -5'
28014 3' -54.5 NC_005887.1 + 11387 0.7 0.493398
Target:  5'- gCGAAGUUccucacguacGCGGGCGCCGACAUCa-- -3'
miRNA:   3'- -GCUUCAGc---------CGUCUGUGGCUGUAGcgc -5'
28014 3' -54.5 NC_005887.1 + 11393 0.67 0.668646
Target:  5'- cCGGAGcgcuggCGGCcGGCGCCGccaagGCAUCGUc -3'
miRNA:   3'- -GCUUCa-----GCCGuCUGUGGC-----UGUAGCGc -5'
28014 3' -54.5 NC_005887.1 + 12176 0.67 0.657534
Target:  5'- gGAAGcugcaGGCGuuccgcgacuucGACGCCGGCAUCgGCGc -3'
miRNA:   3'- gCUUCag---CCGU------------CUGUGGCUGUAG-CGC- -5'
28014 3' -54.5 NC_005887.1 + 12558 0.67 0.668646
Target:  5'- uGgcGUCGaCGGcCGCCGGCAUgCGCa -3'
miRNA:   3'- gCuuCAGCcGUCuGUGGCUGUA-GCGc -5'
28014 3' -54.5 NC_005887.1 + 12657 0.69 0.524089
Target:  5'- aCGAgugGGUCGGCGauuuGcCGCCGACGaagcuuaUCGCGu -3'
miRNA:   3'- -GCU---UCAGCCGU----CuGUGGCUGU-------AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.