miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28014 3' -54.5 NC_005887.1 + 41259 0.68 0.590722
Target:  5'- uCGgcGUCGGCAauGGCGCCGuCGaccugCGCa -3'
miRNA:   3'- -GCuuCAGCCGU--CUGUGGCuGUa----GCGc -5'
28014 3' -54.5 NC_005887.1 + 40547 0.66 0.684141
Target:  5'- -cAGGUCGGCGGcACguccuucggguagcgGCCGACG-CGCa -3'
miRNA:   3'- gcUUCAGCCGUC-UG---------------UGGCUGUaGCGc -5'
28014 3' -54.5 NC_005887.1 + 39387 0.8 0.117071
Target:  5'- cCGAGGcCGGCGGcGCaACCGugGUCGCGa -3'
miRNA:   3'- -GCUUCaGCCGUC-UG-UGGCugUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 38842 0.71 0.432736
Target:  5'- aCGuuG-CGGUAGACgaugcccuuGCCGACGUCGUGc -3'
miRNA:   3'- -GCuuCaGCCGUCUG---------UGGCUGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 37844 0.68 0.601823
Target:  5'- cCGuAGUCGGCgagcAGACGCgCGAUG-CGCGc -3'
miRNA:   3'- -GCuUCAGCCG----UCUGUG-GCUGUaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 37728 0.7 0.483006
Target:  5'- ---cGcCGGCGGcCACCGGCGcCGCGg -3'
miRNA:   3'- gcuuCaGCCGUCuGUGGCUGUaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 36055 0.69 0.546761
Target:  5'- uCGguGUgGGCAGACcggugcgaACCGACGU-GCGg -3'
miRNA:   3'- -GCuuCAgCCGUCUG--------UGGCUGUAgCGC- -5'
28014 3' -54.5 NC_005887.1 + 35872 0.71 0.394793
Target:  5'- ----cUCGGCAGACACCgcGACGcCGCGc -3'
miRNA:   3'- gcuucAGCCGUCUGUGG--CUGUaGCGC- -5'
28014 3' -54.5 NC_005887.1 + 35108 0.69 0.540249
Target:  5'- cCGAGGUCGaugauauuggucgauGCGcccGACGCCGACAgCGCc -3'
miRNA:   3'- -GCUUCAGC---------------CGU---CUGUGGCUGUaGCGc -5'
28014 3' -54.5 NC_005887.1 + 35077 0.69 0.503893
Target:  5'- -cGGG-CGGCcGGgGCCGAUGUCGCGg -3'
miRNA:   3'- gcUUCaGCCGuCUgUGGCUGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 35069 0.67 0.657534
Target:  5'- cCGucGUCGGCGGGCG-CGACuUCGa- -3'
miRNA:   3'- -GCuuCAGCCGUCUGUgGCUGuAGCgc -5'
28014 3' -54.5 NC_005887.1 + 34684 0.67 0.667536
Target:  5'- aCGuuGUCGagcagcaGCGGGCgGCCGuCGUCGCGc -3'
miRNA:   3'- -GCuuCAGC-------CGUCUG-UGGCuGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 33643 0.69 0.533764
Target:  5'- aCGAAGcgcuuaccgccgCGGCGGAuCGCCGGgcccugcacCGUCGCGa -3'
miRNA:   3'- -GCUUCa-----------GCCGUCU-GUGGCU---------GUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 33138 0.68 0.568636
Target:  5'- ---cGUCGGUAGAagcaGCCGACcgUGCc -3'
miRNA:   3'- gcuuCAGCCGUCUg---UGGCUGuaGCGc -5'
28014 3' -54.5 NC_005887.1 + 32705 1.09 0.000944
Target:  5'- uCGAAGUCGGCAGACACCGACAUCGCGa -3'
miRNA:   3'- -GCUUCAGCCGUCUGUGGCUGUAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 31980 0.7 0.461534
Target:  5'- uCGAcGUCGGCAcgccguuguacguGAUACCGGCGUCcacguagaagGCGg -3'
miRNA:   3'- -GCUuCAGCCGU-------------CUGUGGCUGUAG----------CGC- -5'
28014 3' -54.5 NC_005887.1 + 30149 0.73 0.302167
Target:  5'- -cAAGUCGGCGccGAUGCCGGCgucgaaGUCGCGg -3'
miRNA:   3'- gcUUCAGCCGU--CUGUGGCUG------UAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 29769 0.7 0.47272
Target:  5'- gCGGccgGGUCGGCGGACACCaug--CGCa -3'
miRNA:   3'- -GCU---UCAGCCGUCUGUGGcuguaGCGc -5'
28014 3' -54.5 NC_005887.1 + 28329 0.68 0.612951
Target:  5'- ---cGcCGGCGGcGCGCCGGCgGUUGCGg -3'
miRNA:   3'- gcuuCaGCCGUC-UGUGGCUG-UAGCGC- -5'
28014 3' -54.5 NC_005887.1 + 27601 0.67 0.624096
Target:  5'- uCGAGcGUCGuGUcgaAGGCGCUGAUaccGUCGCGg -3'
miRNA:   3'- -GCUU-CAGC-CG---UCUGUGGCUG---UAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.