miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28016 3' -57.5 NC_005887.1 + 26740 0.67 0.486677
Target:  5'- gCCGCCUgcuGCGCGACGcccGUGCGcugcgucucaGCUUCg -3'
miRNA:   3'- -GGCGGG---UGUGCUGCcu-UACGC----------CGAGG- -5'
28016 3' -57.5 NC_005887.1 + 27074 0.66 0.563973
Target:  5'- cUCGUUCGC-CGGCGGAcgcucgccgcgcagcAcUGCGGCUgCCu -3'
miRNA:   3'- -GGCGGGUGuGCUGCCU---------------U-ACGCCGA-GG- -5'
28016 3' -57.5 NC_005887.1 + 27378 0.66 0.527927
Target:  5'- gCgGCCUGCGCGGCGuaggcgucGAGUuGCGGCgcgUCg -3'
miRNA:   3'- -GgCGGGUGUGCUGC--------CUUA-CGCCGa--GG- -5'
28016 3' -57.5 NC_005887.1 + 27451 0.66 0.526879
Target:  5'- gCCgGCCCACACGuucgagcGCGGAAucucgagcUGuuGCUCg -3'
miRNA:   3'- -GG-CGGGUGUGC-------UGCCUU--------ACgcCGAGg -5'
28016 3' -57.5 NC_005887.1 + 27659 0.69 0.364881
Target:  5'- cCCGCCCGcCGCGACGagcccGAucGUGCGGggCa -3'
miRNA:   3'- -GGCGGGU-GUGCUGC-----CU--UACGCCgaGg -5'
28016 3' -57.5 NC_005887.1 + 27801 0.67 0.507124
Target:  5'- gCGCCgACgcagGCGAgGGAAUagauaGCGGCUUUc -3'
miRNA:   3'- gGCGGgUG----UGCUgCCUUA-----CGCCGAGG- -5'
28016 3' -57.5 NC_005887.1 + 28575 0.67 0.507124
Target:  5'- gCCGCCCGCuGCG-CGGAc-GCGGUc-- -3'
miRNA:   3'- -GGCGGGUG-UGCuGCCUuaCGCCGagg -5'
28016 3' -57.5 NC_005887.1 + 29539 0.66 0.581168
Target:  5'- aCGUCgCGCGCGACGGccugGCacaGGUUCUc -3'
miRNA:   3'- gGCGG-GUGUGCUGCCuua-CG---CCGAGG- -5'
28016 3' -57.5 NC_005887.1 + 30938 0.67 0.507124
Target:  5'- gCGCUCAgACGAUGccuugGCGGCgCCg -3'
miRNA:   3'- gGCGGGUgUGCUGCcuua-CGCCGaGG- -5'
28016 3' -57.5 NC_005887.1 + 30983 0.7 0.316216
Target:  5'- uUCGCCCACuguuCGGggUGCGuCUCUc -3'
miRNA:   3'- -GGCGGGUGugcuGCCuuACGCcGAGG- -5'
28016 3' -57.5 NC_005887.1 + 31505 0.66 0.559695
Target:  5'- gCCGCgCGCGCGGCGcGGAugaacgcaguUGUcGCUUCg -3'
miRNA:   3'- -GGCGgGUGUGCUGC-CUU----------ACGcCGAGG- -5'
28016 3' -57.5 NC_005887.1 + 32012 0.75 0.152971
Target:  5'- gCGUCCACGuagaaGGCGGAcgauUGCGGCUCg -3'
miRNA:   3'- gGCGGGUGUg----CUGCCUu---ACGCCGAGg -5'
28016 3' -57.5 NC_005887.1 + 32053 0.66 0.559695
Target:  5'- aCGCCCGCA-GACGGAAa-CGGgaCa -3'
miRNA:   3'- gGCGGGUGUgCUGCCUUacGCCgaGg -5'
28016 3' -57.5 NC_005887.1 + 32270 1.13 0.000279
Target:  5'- gCCGCCCACACGACGGAAUGCGGCUCCu -3'
miRNA:   3'- -GGCGGGUGUGCUGCCUUACGCCGAGG- -5'
28016 3' -57.5 NC_005887.1 + 32715 0.67 0.516444
Target:  5'- gCCGCgCGguucaccCACGGCGGggUagcGCGGCg-- -3'
miRNA:   3'- -GGCGgGU-------GUGCUGCCuuA---CGCCGagg -5'
28016 3' -57.5 NC_005887.1 + 33383 0.75 0.165923
Target:  5'- gCGCCgGCGCGGCaGGAUGaGGCUCa -3'
miRNA:   3'- gGCGGgUGUGCUGcCUUACgCCGAGg -5'
28016 3' -57.5 NC_005887.1 + 34372 0.68 0.437384
Target:  5'- gCGCCC-CGCGuauCaGAGUGCGGC-Cg -3'
miRNA:   3'- gGCGGGuGUGCu--GcCUUACGCCGaGg -5'
28016 3' -57.5 NC_005887.1 + 35897 0.66 0.549039
Target:  5'- gCGCCCggucuucggACA-GACGGAAUGCcGCguguugCCg -3'
miRNA:   3'- gGCGGG---------UGUgCUGCCUUACGcCGa-----GG- -5'
28016 3' -57.5 NC_005887.1 + 36660 0.69 0.364029
Target:  5'- gCGCCCAUcuuuuCGAUGGAuugccagaauucgGUGuCGGCUuCCa -3'
miRNA:   3'- gGCGGGUGu----GCUGCCU-------------UAC-GCCGA-GG- -5'
28016 3' -57.5 NC_005887.1 + 36885 0.69 0.364881
Target:  5'- uCgGCCUGCGuCGugGuGGAUGCGGCaggagugCCa -3'
miRNA:   3'- -GgCGGGUGU-GCugC-CUUACGCCGa------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.