miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28016 3' -57.5 NC_005887.1 + 13860 0.66 0.553294
Target:  5'- cCCGCCgGCGCGcgucuacuucgucgaGCuGAA-GCGGC-CCg -3'
miRNA:   3'- -GGCGGgUGUGC---------------UGcCUUaCGCCGaGG- -5'
28016 3' -57.5 NC_005887.1 + 14145 0.74 0.189701
Target:  5'- aCCGCCgagaCGCGCGGCGcuGAUGCGGCgcacagCCc -3'
miRNA:   3'- -GGCGG----GUGUGCUGCc-UUACGCCGa-----GG- -5'
28016 3' -57.5 NC_005887.1 + 14680 0.7 0.331876
Target:  5'- gCUGcCCCGCACGAuCGGGcucGUcGCGGCgggcgggCCg -3'
miRNA:   3'- -GGC-GGGUGUGCU-GCCU---UA-CGCCGa------GG- -5'
28016 3' -57.5 NC_005887.1 + 14753 0.7 0.316216
Target:  5'- gCGCCUucgACACGACGcucGAcgGCGcGCUCg -3'
miRNA:   3'- gGCGGG---UGUGCUGC---CUuaCGC-CGAGg -5'
28016 3' -57.5 NC_005887.1 + 14835 0.66 0.549039
Target:  5'- aCCGCCCGcCGCGuauucacgccAUGGGAguaccaGgGGCUCa -3'
miRNA:   3'- -GGCGGGU-GUGC----------UGCCUUa-----CgCCGAGg -5'
28016 3' -57.5 NC_005887.1 + 14878 0.72 0.265828
Target:  5'- gCGCaCCGCGCGGCaGAAUGCGccaGCUgCu -3'
miRNA:   3'- gGCG-GGUGUGCUGcCUUACGC---CGAgG- -5'
28016 3' -57.5 NC_005887.1 + 16028 0.67 0.496853
Target:  5'- gCGCCgGcCACGGCcugaaccugcaGGAcgGCGGCaacaUCCu -3'
miRNA:   3'- gGCGGgU-GUGCUG-----------CCUuaCGCCG----AGG- -5'
28016 3' -57.5 NC_005887.1 + 16450 0.66 0.559695
Target:  5'- aCCGCgUGCGCG-CGGGcAUGC-GCUCg -3'
miRNA:   3'- -GGCGgGUGUGCuGCCU-UACGcCGAGg -5'
28016 3' -57.5 NC_005887.1 + 16728 0.67 0.496853
Target:  5'- aCgGCCgGCGCGAucaaguCGGAuuacAUGCGGCa-- -3'
miRNA:   3'- -GgCGGgUGUGCU------GCCU----UACGCCGagg -5'
28016 3' -57.5 NC_005887.1 + 16952 0.69 0.382214
Target:  5'- gCGCuucaaCCGCGCGGCGGcAAUGuCGGCgagCUc -3'
miRNA:   3'- gGCG-----GGUGUGCUGCC-UUAC-GCCGa--GG- -5'
28016 3' -57.5 NC_005887.1 + 17887 0.66 0.559695
Target:  5'- cCUGUCCGcCGCGACGauGAAguucgGCGGCgUCa -3'
miRNA:   3'- -GGCGGGU-GUGCUGC--CUUa----CGCCG-AGg -5'
28016 3' -57.5 NC_005887.1 + 22197 0.67 0.517484
Target:  5'- uCUGUCCgGCGCGGCGGucgcauauuAcgGUGGC-CCg -3'
miRNA:   3'- -GGCGGG-UGUGCUGCC---------UuaCGCCGaGG- -5'
28016 3' -57.5 NC_005887.1 + 23175 0.68 0.427872
Target:  5'- aCGCCCGCGCcgcucACGGAAUaauCGGUgCCg -3'
miRNA:   3'- gGCGGGUGUGc----UGCCUUAc--GCCGaGG- -5'
28016 3' -57.5 NC_005887.1 + 23938 0.68 0.418482
Target:  5'- gUCGUgCugACGACGGcgccGCGGCguaggCCa -3'
miRNA:   3'- -GGCGgGugUGCUGCCuua-CGCCGa----GG- -5'
28016 3' -57.5 NC_005887.1 + 24458 0.67 0.507124
Target:  5'- gCCGCCgAacuucaucguCGCGGCGGAca--GGUUCCg -3'
miRNA:   3'- -GGCGGgU----------GUGCUGCCUuacgCCGAGG- -5'
28016 3' -57.5 NC_005887.1 + 24872 0.73 0.227986
Target:  5'- aCCGUCCAgGCGGCGGccGAUGCcgcgcGCUCg -3'
miRNA:   3'- -GGCGGGUgUGCUGCC--UUACGc----CGAGg -5'
28016 3' -57.5 NC_005887.1 + 25402 0.7 0.323975
Target:  5'- gCCGCCCGCGCGGuuGAA-GC-GCUCa -3'
miRNA:   3'- -GGCGGGUGUGCUgcCUUaCGcCGAGg -5'
28016 3' -57.5 NC_005887.1 + 25492 0.72 0.250752
Target:  5'- gCCGUCCGCGCcGCGGuacaccucgcggauGAUGuCGcGCUCCa -3'
miRNA:   3'- -GGCGGGUGUGcUGCC--------------UUAC-GC-CGAGG- -5'
28016 3' -57.5 NC_005887.1 + 25824 0.68 0.418482
Target:  5'- gCGCCCACuCGGCGccg-GCGGCg-- -3'
miRNA:   3'- gGCGGGUGuGCUGCcuuaCGCCGagg -5'
28016 3' -57.5 NC_005887.1 + 26668 0.69 0.391083
Target:  5'- uCCGgCCGCGCGGCGGugagcugGuCGaGCUCg -3'
miRNA:   3'- -GGCgGGUGUGCUGCCuua----C-GC-CGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.