miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28016 3' -57.5 NC_005887.1 + 27659 0.69 0.364881
Target:  5'- cCCGCCCGcCGCGACGagcccGAucGUGCGGggCa -3'
miRNA:   3'- -GGCGGGU-GUGCUGC-----CU--UACGCCgaGg -5'
28016 3' -57.5 NC_005887.1 + 36885 0.69 0.364881
Target:  5'- uCgGCCUGCGuCGugGuGGAUGCGGCaggagugCCa -3'
miRNA:   3'- -GgCGGGUGU-GCugC-CUUACGCCGa------GG- -5'
28016 3' -57.5 NC_005887.1 + 16952 0.69 0.382214
Target:  5'- gCGCuucaaCCGCGCGGCGGcAAUGuCGGCgagCUc -3'
miRNA:   3'- gGCG-----GGUGUGCUGCC-UUAC-GCCGa--GG- -5'
28016 3' -57.5 NC_005887.1 + 1496 0.69 0.382214
Target:  5'- nCGCUCGCGCGGCGcGGccGUGCGGaaCa -3'
miRNA:   3'- gGCGGGUGUGCUGC-CU--UACGCCgaGg -5'
28016 3' -57.5 NC_005887.1 + 10702 0.69 0.391083
Target:  5'- gCCGUCgaACGCGAUGGAccgcGCGGUgCCg -3'
miRNA:   3'- -GGCGGg-UGUGCUGCCUua--CGCCGaGG- -5'
28016 3' -57.5 NC_005887.1 + 26668 0.69 0.391083
Target:  5'- uCCGgCCGCGCGGCGGugagcugGuCGaGCUCg -3'
miRNA:   3'- -GGCgGGUGUGCUGCCuua----C-GC-CGAGg -5'
28016 3' -57.5 NC_005887.1 + 6306 0.68 0.418482
Target:  5'- uCUGCCCACAcCGACGuGgcgcaagcuguAcgGCGGCguucugCCg -3'
miRNA:   3'- -GGCGGGUGU-GCUGC-C-----------UuaCGCCGa-----GG- -5'
28016 3' -57.5 NC_005887.1 + 23938 0.68 0.418482
Target:  5'- gUCGUgCugACGACGGcgccGCGGCguaggCCa -3'
miRNA:   3'- -GGCGgGugUGCUGCCuua-CGCCGa----GG- -5'
28016 3' -57.5 NC_005887.1 + 25824 0.68 0.418482
Target:  5'- gCGCCCACuCGGCGccg-GCGGCg-- -3'
miRNA:   3'- gGCGGGUGuGCUGCcuuaCGCCGagg -5'
28016 3' -57.5 NC_005887.1 + 23175 0.68 0.427872
Target:  5'- aCGCCCGCGCcgcucACGGAAUaauCGGUgCCg -3'
miRNA:   3'- gGCGGGUGUGc----UGCCUUAc--GCCGaGG- -5'
28016 3' -57.5 NC_005887.1 + 13781 0.68 0.437384
Target:  5'- gCGUCCGCGCaGCGG---GCGGCgacgCCu -3'
miRNA:   3'- gGCGGGUGUGcUGCCuuaCGCCGa---GG- -5'
28016 3' -57.5 NC_005887.1 + 34372 0.68 0.437384
Target:  5'- gCGCCC-CGCGuauCaGAGUGCGGC-Cg -3'
miRNA:   3'- gGCGGGuGUGCu--GcCUUACGCCGaGg -5'
28016 3' -57.5 NC_005887.1 + 2227 0.68 0.447017
Target:  5'- gCGCaCCGCACGcuguagGCGuccUGCGGCUCg -3'
miRNA:   3'- gGCG-GGUGUGC------UGCcuuACGCCGAGg -5'
28016 3' -57.5 NC_005887.1 + 39815 0.68 0.447017
Target:  5'- gCCGCCCGacaGCGccuuGCGcagcGUGCGGCagUCCg -3'
miRNA:   3'- -GGCGGGUg--UGC----UGCcu--UACGCCG--AGG- -5'
28016 3' -57.5 NC_005887.1 + 40862 0.68 0.463659
Target:  5'- gCCGCgCCGCGCGAgcgccgcacgccguCGGcGUcgGGCUCCu -3'
miRNA:   3'- -GGCG-GGUGUGCU--------------GCCuUAcgCCGAGG- -5'
28016 3' -57.5 NC_005887.1 + 38622 0.68 0.466629
Target:  5'- gCCGUCCAgcuugcgcggauCGCGGuCGGcgcGCGGCUCg -3'
miRNA:   3'- -GGCGGGU------------GUGCU-GCCuuaCGCCGAGg -5'
28016 3' -57.5 NC_005887.1 + 10100 0.68 0.466629
Target:  5'- gCgGCCCGCGcCGACGGccagcuGAU-CGGCUgCa -3'
miRNA:   3'- -GgCGGGUGU-GCUGCC------UUAcGCCGAgG- -5'
28016 3' -57.5 NC_005887.1 + 26740 0.67 0.486677
Target:  5'- gCCGCCUgcuGCGCGACGcccGUGCGcugcgucucaGCUUCg -3'
miRNA:   3'- -GGCGGG---UGUGCUGCcu-UACGC----------CGAGG- -5'
28016 3' -57.5 NC_005887.1 + 16028 0.67 0.496853
Target:  5'- gCGCCgGcCACGGCcugaaccugcaGGAcgGCGGCaacaUCCu -3'
miRNA:   3'- gGCGGgU-GUGCUG-----------CCUuaCGCCG----AGG- -5'
28016 3' -57.5 NC_005887.1 + 1687 0.67 0.496853
Target:  5'- aUCGCCCcgaGCACGagcgcaagcugcGCGGcAUGCaGCUCa -3'
miRNA:   3'- -GGCGGG---UGUGC------------UGCCuUACGcCGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.