Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 37418 | 0.72 | 0.240067 |
Target: 5'- aCUGCCUGCACGccagguGCGGAGUggagcGCGGCgcuugCCu -3' miRNA: 3'- -GGCGGGUGUGC------UGCCUUA-----CGCCGa----GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 14878 | 0.72 | 0.265828 |
Target: 5'- gCGCaCCGCGCGGCaGAAUGCGccaGCUgCu -3' miRNA: 3'- gGCG-GGUGUGCUGcCUUACGC---CGAgG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 30983 | 0.7 | 0.316216 |
Target: 5'- uUCGCCCACuguuCGGggUGCGuCUCUc -3' miRNA: 3'- -GGCGGGUGugcuGCCuuACGCcGAGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 14680 | 0.7 | 0.331876 |
Target: 5'- gCUGcCCCGCACGAuCGGGcucGUcGCGGCgggcgggCCg -3' miRNA: 3'- -GGC-GGGUGUGCU-GCCU---UA-CGCCGa------GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 10702 | 0.69 | 0.391083 |
Target: 5'- gCCGUCgaACGCGAUGGAccgcGCGGUgCCg -3' miRNA: 3'- -GGCGGg-UGUGCUGCCUua--CGCCGaGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 16952 | 0.69 | 0.382214 |
Target: 5'- gCGCuucaaCCGCGCGGCGGcAAUGuCGGCgagCUc -3' miRNA: 3'- gGCG-----GGUGUGCUGCC-UUAC-GCCGa--GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 1496 | 0.69 | 0.382214 |
Target: 5'- nCGCUCGCGCGGCGcGGccGUGCGGaaCa -3' miRNA: 3'- gGCGGGUGUGCUGC-CU--UACGCCgaGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 36660 | 0.69 | 0.364029 |
Target: 5'- gCGCCCAUcuuuuCGAUGGAuugccagaauucgGUGuCGGCUuCCa -3' miRNA: 3'- gGCGGGUGu----GCUGCCU-------------UAC-GCCGA-GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 41587 | 0.7 | 0.331876 |
Target: 5'- cCUGUCgGCcaGCGGCGGcccaGGUGCGGCggCCg -3' miRNA: 3'- -GGCGGgUG--UGCUGCC----UUACGCCGa-GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 36952 | 0.66 | 0.538448 |
Target: 5'- gCCGCCCGC-CGGuucacCGGucgcGCuGGCUUCg -3' miRNA: 3'- -GGCGGGUGuGCU-----GCCuua-CG-CCGAGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 35897 | 0.66 | 0.549039 |
Target: 5'- gCGCCCggucuucggACA-GACGGAAUGCcGCguguugCCg -3' miRNA: 3'- gGCGGG---------UGUgCUGCCUUACGcCGa-----GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 39778 | 0.66 | 0.549039 |
Target: 5'- aCCGCUCGC-CGcucACGGccAUGCGGCg-- -3' miRNA: 3'- -GGCGGGUGuGC---UGCCu-UACGCCGagg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 14835 | 0.66 | 0.549039 |
Target: 5'- aCCGCCCGcCGCGuauucacgccAUGGGAguaccaGgGGCUCa -3' miRNA: 3'- -GGCGGGU-GUGC----------UGCCUUa-----CgCCGAGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 13860 | 0.66 | 0.553294 |
Target: 5'- cCCGCCgGCGCGcgucuacuucgucgaGCuGAA-GCGGC-CCg -3' miRNA: 3'- -GGCGGgUGUGC---------------UGcCUUaCGCCGaGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 39394 | 0.66 | 0.559695 |
Target: 5'- gUCGCCgGCGagGAUGGuc-GCGGCggugCCg -3' miRNA: 3'- -GGCGGgUGUg-CUGCCuuaCGCCGa---GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 27074 | 0.66 | 0.563973 |
Target: 5'- cUCGUUCGC-CGGCGGAcgcucgccgcgcagcAcUGCGGCUgCCu -3' miRNA: 3'- -GGCGGGUGuGCUGCCU---------------U-ACGCCGA-GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 4669 | 0.66 | 0.570407 |
Target: 5'- gUCGCUUGCAUG-CGGg--GCGGCUgCu -3' miRNA: 3'- -GGCGGGUGUGCuGCCuuaCGCCGAgG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 12967 | 0.66 | 0.570407 |
Target: 5'- aCCGCgCCGCAugggcCGAgGGcAUGCcGCUCg -3' miRNA: 3'- -GGCG-GGUGU-----GCUgCCuUACGcCGAGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 12441 | 0.66 | 0.581168 |
Target: 5'- -gGCCCgcgGCAUGugGGAGUG-GGC-Cg -3' miRNA: 3'- ggCGGG---UGUGCugCCUUACgCCGaGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 32270 | 1.13 | 0.000279 |
Target: 5'- gCCGCCCACACGACGGAAUGCGGCUCCu -3' miRNA: 3'- -GGCGGGUGUGCUGCCUUACGCCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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