Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 29539 | 0.66 | 0.581168 |
Target: 5'- aCGUCgCGCGCGACGGccugGCacaGGUUCUc -3' miRNA: 3'- gGCGG-GUGUGCUGCCuua-CG---CCGAGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 28575 | 0.67 | 0.507124 |
Target: 5'- gCCGCCCGCuGCG-CGGAc-GCGGUc-- -3' miRNA: 3'- -GGCGGGUG-UGCuGCCUuaCGCCGagg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 27801 | 0.67 | 0.507124 |
Target: 5'- gCGCCgACgcagGCGAgGGAAUagauaGCGGCUUUc -3' miRNA: 3'- gGCGGgUG----UGCUgCCUUA-----CGCCGAGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 27659 | 0.69 | 0.364881 |
Target: 5'- cCCGCCCGcCGCGACGagcccGAucGUGCGGggCa -3' miRNA: 3'- -GGCGGGU-GUGCUGC-----CU--UACGCCgaGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 27451 | 0.66 | 0.526879 |
Target: 5'- gCCgGCCCACACGuucgagcGCGGAAucucgagcUGuuGCUCg -3' miRNA: 3'- -GG-CGGGUGUGC-------UGCCUU--------ACgcCGAGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 27378 | 0.66 | 0.527927 |
Target: 5'- gCgGCCUGCGCGGCGuaggcgucGAGUuGCGGCgcgUCg -3' miRNA: 3'- -GgCGGGUGUGCUGC--------CUUA-CGCCGa--GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 27074 | 0.66 | 0.563973 |
Target: 5'- cUCGUUCGC-CGGCGGAcgcucgccgcgcagcAcUGCGGCUgCCu -3' miRNA: 3'- -GGCGGGUGuGCUGCCU---------------U-ACGCCGA-GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 26740 | 0.67 | 0.486677 |
Target: 5'- gCCGCCUgcuGCGCGACGcccGUGCGcugcgucucaGCUUCg -3' miRNA: 3'- -GGCGGG---UGUGCUGCcu-UACGC----------CGAGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 26668 | 0.69 | 0.391083 |
Target: 5'- uCCGgCCGCGCGGCGGugagcugGuCGaGCUCg -3' miRNA: 3'- -GGCgGGUGUGCUGCCuua----C-GC-CGAGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 25824 | 0.68 | 0.418482 |
Target: 5'- gCGCCCACuCGGCGccg-GCGGCg-- -3' miRNA: 3'- gGCGGGUGuGCUGCcuuaCGCCGagg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 25492 | 0.72 | 0.250752 |
Target: 5'- gCCGUCCGCGCcGCGGuacaccucgcggauGAUGuCGcGCUCCa -3' miRNA: 3'- -GGCGGGUGUGcUGCC--------------UUAC-GC-CGAGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 25402 | 0.7 | 0.323975 |
Target: 5'- gCCGCCCGCGCGGuuGAA-GC-GCUCa -3' miRNA: 3'- -GGCGGGUGUGCUgcCUUaCGcCGAGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 24872 | 0.73 | 0.227986 |
Target: 5'- aCCGUCCAgGCGGCGGccGAUGCcgcgcGCUCg -3' miRNA: 3'- -GGCGGGUgUGCUGCC--UUACGc----CGAGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 24458 | 0.67 | 0.507124 |
Target: 5'- gCCGCCgAacuucaucguCGCGGCGGAca--GGUUCCg -3' miRNA: 3'- -GGCGGgU----------GUGCUGCCUuacgCCGAGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 23938 | 0.68 | 0.418482 |
Target: 5'- gUCGUgCugACGACGGcgccGCGGCguaggCCa -3' miRNA: 3'- -GGCGgGugUGCUGCCuua-CGCCGa----GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 23175 | 0.68 | 0.427872 |
Target: 5'- aCGCCCGCGCcgcucACGGAAUaauCGGUgCCg -3' miRNA: 3'- gGCGGGUGUGc----UGCCUUAc--GCCGaGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 22197 | 0.67 | 0.517484 |
Target: 5'- uCUGUCCgGCGCGGCGGucgcauauuAcgGUGGC-CCg -3' miRNA: 3'- -GGCGGG-UGUGCUGCC---------UuaCGCCGaGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 17887 | 0.66 | 0.559695 |
Target: 5'- cCUGUCCGcCGCGACGauGAAguucgGCGGCgUCa -3' miRNA: 3'- -GGCGGGU-GUGCUGC--CUUa----CGCCG-AGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 16952 | 0.69 | 0.382214 |
Target: 5'- gCGCuucaaCCGCGCGGCGGcAAUGuCGGCgagCUc -3' miRNA: 3'- gGCG-----GGUGUGCUGCC-UUAC-GCCGa--GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 16728 | 0.67 | 0.496853 |
Target: 5'- aCgGCCgGCGCGAucaaguCGGAuuacAUGCGGCa-- -3' miRNA: 3'- -GgCGGgUGUGCU------GCCU----UACGCCGagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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