miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28016 3' -57.5 NC_005887.1 + 41587 0.7 0.331876
Target:  5'- cCUGUCgGCcaGCGGCGGcccaGGUGCGGCggCCg -3'
miRNA:   3'- -GGCGGgUG--UGCUGCC----UUACGCCGa-GG- -5'
28016 3' -57.5 NC_005887.1 + 40862 0.68 0.463659
Target:  5'- gCCGCgCCGCGCGAgcgccgcacgccguCGGcGUcgGGCUCCu -3'
miRNA:   3'- -GGCG-GGUGUGCU--------------GCCuUAcgCCGAGG- -5'
28016 3' -57.5 NC_005887.1 + 39815 0.68 0.447017
Target:  5'- gCCGCCCGacaGCGccuuGCGcagcGUGCGGCagUCCg -3'
miRNA:   3'- -GGCGGGUg--UGC----UGCcu--UACGCCG--AGG- -5'
28016 3' -57.5 NC_005887.1 + 39778 0.66 0.549039
Target:  5'- aCCGCUCGC-CGcucACGGccAUGCGGCg-- -3'
miRNA:   3'- -GGCGGGUGuGC---UGCCu-UACGCCGagg -5'
28016 3' -57.5 NC_005887.1 + 39394 0.66 0.559695
Target:  5'- gUCGCCgGCGagGAUGGuc-GCGGCggugCCg -3'
miRNA:   3'- -GGCGGgUGUg-CUGCCuuaCGCCGa---GG- -5'
28016 3' -57.5 NC_005887.1 + 38622 0.68 0.466629
Target:  5'- gCCGUCCAgcuugcgcggauCGCGGuCGGcgcGCGGCUCg -3'
miRNA:   3'- -GGCGGGU------------GUGCU-GCCuuaCGCCGAGg -5'
28016 3' -57.5 NC_005887.1 + 37418 0.72 0.240067
Target:  5'- aCUGCCUGCACGccagguGCGGAGUggagcGCGGCgcuugCCu -3'
miRNA:   3'- -GGCGGGUGUGC------UGCCUUA-----CGCCGa----GG- -5'
28016 3' -57.5 NC_005887.1 + 36952 0.66 0.538448
Target:  5'- gCCGCCCGC-CGGuucacCGGucgcGCuGGCUUCg -3'
miRNA:   3'- -GGCGGGUGuGCU-----GCCuua-CG-CCGAGG- -5'
28016 3' -57.5 NC_005887.1 + 36885 0.69 0.364881
Target:  5'- uCgGCCUGCGuCGugGuGGAUGCGGCaggagugCCa -3'
miRNA:   3'- -GgCGGGUGU-GCugC-CUUACGCCGa------GG- -5'
28016 3' -57.5 NC_005887.1 + 36660 0.69 0.364029
Target:  5'- gCGCCCAUcuuuuCGAUGGAuugccagaauucgGUGuCGGCUuCCa -3'
miRNA:   3'- gGCGGGUGu----GCUGCCU-------------UAC-GCCGA-GG- -5'
28016 3' -57.5 NC_005887.1 + 35897 0.66 0.549039
Target:  5'- gCGCCCggucuucggACA-GACGGAAUGCcGCguguugCCg -3'
miRNA:   3'- gGCGGG---------UGUgCUGCCUUACGcCGa-----GG- -5'
28016 3' -57.5 NC_005887.1 + 34372 0.68 0.437384
Target:  5'- gCGCCC-CGCGuauCaGAGUGCGGC-Cg -3'
miRNA:   3'- gGCGGGuGUGCu--GcCUUACGCCGaGg -5'
28016 3' -57.5 NC_005887.1 + 33383 0.75 0.165923
Target:  5'- gCGCCgGCGCGGCaGGAUGaGGCUCa -3'
miRNA:   3'- gGCGGgUGUGCUGcCUUACgCCGAGg -5'
28016 3' -57.5 NC_005887.1 + 32715 0.67 0.516444
Target:  5'- gCCGCgCGguucaccCACGGCGGggUagcGCGGCg-- -3'
miRNA:   3'- -GGCGgGU-------GUGCUGCCuuA---CGCCGagg -5'
28016 3' -57.5 NC_005887.1 + 32270 1.13 0.000279
Target:  5'- gCCGCCCACACGACGGAAUGCGGCUCCu -3'
miRNA:   3'- -GGCGGGUGUGCUGCCUUACGCCGAGG- -5'
28016 3' -57.5 NC_005887.1 + 32053 0.66 0.559695
Target:  5'- aCGCCCGCA-GACGGAAa-CGGgaCa -3'
miRNA:   3'- gGCGGGUGUgCUGCCUUacGCCgaGg -5'
28016 3' -57.5 NC_005887.1 + 32012 0.75 0.152971
Target:  5'- gCGUCCACGuagaaGGCGGAcgauUGCGGCUCg -3'
miRNA:   3'- gGCGGGUGUg----CUGCCUu---ACGCCGAGg -5'
28016 3' -57.5 NC_005887.1 + 31505 0.66 0.559695
Target:  5'- gCCGCgCGCGCGGCGcGGAugaacgcaguUGUcGCUUCg -3'
miRNA:   3'- -GGCGgGUGUGCUGC-CUU----------ACGcCGAGG- -5'
28016 3' -57.5 NC_005887.1 + 30983 0.7 0.316216
Target:  5'- uUCGCCCACuguuCGGggUGCGuCUCUc -3'
miRNA:   3'- -GGCGGGUGugcuGCCuuACGCcGAGG- -5'
28016 3' -57.5 NC_005887.1 + 30938 0.67 0.507124
Target:  5'- gCGCUCAgACGAUGccuugGCGGCgCCg -3'
miRNA:   3'- gGCGGGUgUGCUGCcuua-CGCCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.