Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28016 | 3' | -57.5 | NC_005887.1 | + | 1474 | 0.73 | 0.233961 |
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Target: 5'- -aGCCCgACGcCGACGGcGUGCGGCg-- -3' miRNA: 3'- ggCGGG-UGU-GCUGCCuUACGCCGagg -5' |
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| 28016 | 3' | -57.5 | NC_005887.1 | + | 24872 | 0.73 | 0.227986 |
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Target: 5'- aCCGUCCAgGCGGCGGccGAUGCcgcgcGCUCg -3' miRNA: 3'- -GGCGGGUgUGCUGCC--UUACGc----CGAGg -5' |
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| 28016 | 3' | -57.5 | NC_005887.1 | + | 14145 | 0.74 | 0.189701 |
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Target: 5'- aCCGCCgagaCGCGCGGCGcuGAUGCGGCgcacagCCc -3' miRNA: 3'- -GGCGG----GUGUGCUGCc-UUACGCCGa-----GG- -5' |
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| 28016 | 3' | -57.5 | NC_005887.1 | + | 33383 | 0.75 | 0.165923 |
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Target: 5'- gCGCCgGCGCGGCaGGAUGaGGCUCa -3' miRNA: 3'- gGCGGgUGUGCUGcCUUACgCCGAGg -5' |
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| 28016 | 3' | -57.5 | NC_005887.1 | + | 1580 | 0.75 | 0.157183 |
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Target: 5'- aCCGCCgGCuCGGCGGcgcGCGGCgcgCCa -3' miRNA: 3'- -GGCGGgUGuGCUGCCuuaCGCCGa--GG- -5' |
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| 28016 | 3' | -57.5 | NC_005887.1 | + | 32012 | 0.75 | 0.152971 |
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Target: 5'- gCGUCCACGuagaaGGCGGAcgauUGCGGCUCg -3' miRNA: 3'- gGCGGGUGUg----CUGCCUu---ACGCCGAGg -5' |
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| 28016 | 3' | -57.5 | NC_005887.1 | + | 13395 | 0.76 | 0.140944 |
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Target: 5'- -gGCCgGCGCGGCGGAcgucgGCGGCaagCCg -3' miRNA: 3'- ggCGGgUGUGCUGCCUua---CGCCGa--GG- -5' |
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| 28016 | 3' | -57.5 | NC_005887.1 | + | 32270 | 1.13 | 0.000279 |
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Target: 5'- gCCGCCCACACGACGGAAUGCGGCUCCu -3' miRNA: 3'- -GGCGGGUGUGCUGCCUUACGCCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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