miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28016 3' -57.5 NC_005887.1 + 25824 0.68 0.418482
Target:  5'- gCGCCCACuCGGCGccg-GCGGCg-- -3'
miRNA:   3'- gGCGGGUGuGCUGCcuuaCGCCGagg -5'
28016 3' -57.5 NC_005887.1 + 6306 0.68 0.418482
Target:  5'- uCUGCCCACAcCGACGuGgcgcaagcuguAcgGCGGCguucugCCg -3'
miRNA:   3'- -GGCGGGUGU-GCUGC-C-----------UuaCGCCGa-----GG- -5'
28016 3' -57.5 NC_005887.1 + 26668 0.69 0.391083
Target:  5'- uCCGgCCGCGCGGCGGugagcugGuCGaGCUCg -3'
miRNA:   3'- -GGCgGGUGUGCUGCCuua----C-GC-CGAGg -5'
28016 3' -57.5 NC_005887.1 + 10702 0.69 0.391083
Target:  5'- gCCGUCgaACGCGAUGGAccgcGCGGUgCCg -3'
miRNA:   3'- -GGCGGg-UGUGCUGCCUua--CGCCGaGG- -5'
28016 3' -57.5 NC_005887.1 + 16952 0.69 0.382214
Target:  5'- gCGCuucaaCCGCGCGGCGGcAAUGuCGGCgagCUc -3'
miRNA:   3'- gGCG-----GGUGUGCUGCC-UUAC-GCCGa--GG- -5'
28016 3' -57.5 NC_005887.1 + 1496 0.69 0.382214
Target:  5'- nCGCUCGCGCGGCGcGGccGUGCGGaaCa -3'
miRNA:   3'- gGCGGGUGUGCUGC-CU--UACGCCgaGg -5'
28016 3' -57.5 NC_005887.1 + 27659 0.69 0.364881
Target:  5'- cCCGCCCGcCGCGACGagcccGAucGUGCGGggCa -3'
miRNA:   3'- -GGCGGGU-GUGCUGC-----CU--UACGCCgaGg -5'
28016 3' -57.5 NC_005887.1 + 36885 0.69 0.364881
Target:  5'- uCgGCCUGCGuCGugGuGGAUGCGGCaggagugCCa -3'
miRNA:   3'- -GgCGGGUGU-GCugC-CUUACGCCGa------GG- -5'
28016 3' -57.5 NC_005887.1 + 36660 0.69 0.364029
Target:  5'- gCGCCCAUcuuuuCGAUGGAuugccagaauucgGUGuCGGCUuCCa -3'
miRNA:   3'- gGCGGGUGu----GCUGCCU-------------UAC-GCCGA-GG- -5'
28016 3' -57.5 NC_005887.1 + 618 0.7 0.331876
Target:  5'- -aGCCCGCGCGcCGGGAU-CGGaucgCCg -3'
miRNA:   3'- ggCGGGUGUGCuGCCUUAcGCCga--GG- -5'
28016 3' -57.5 NC_005887.1 + 41587 0.7 0.331876
Target:  5'- cCUGUCgGCcaGCGGCGGcccaGGUGCGGCggCCg -3'
miRNA:   3'- -GGCGGgUG--UGCUGCC----UUACGCCGa-GG- -5'
28016 3' -57.5 NC_005887.1 + 14680 0.7 0.331876
Target:  5'- gCUGcCCCGCACGAuCGGGcucGUcGCGGCgggcgggCCg -3'
miRNA:   3'- -GGC-GGGUGUGCU-GCCU---UA-CGCCGa------GG- -5'
28016 3' -57.5 NC_005887.1 + 25402 0.7 0.323975
Target:  5'- gCCGCCCGCGCGGuuGAA-GC-GCUCa -3'
miRNA:   3'- -GGCGGGUGUGCUgcCUUaCGcCGAGg -5'
28016 3' -57.5 NC_005887.1 + 14753 0.7 0.316216
Target:  5'- gCGCCUucgACACGACGcucGAcgGCGcGCUCg -3'
miRNA:   3'- gGCGGG---UGUGCUGC---CUuaCGC-CGAGg -5'
28016 3' -57.5 NC_005887.1 + 30983 0.7 0.316216
Target:  5'- uUCGCCCACuguuCGGggUGCGuCUCUc -3'
miRNA:   3'- -GGCGGGUGugcuGCCuuACGCcGAGG- -5'
28016 3' -57.5 NC_005887.1 + 4754 0.71 0.301119
Target:  5'- aCGCgCGCACuGACGaGAUccgaauuccgccGCGGCUCCg -3'
miRNA:   3'- gGCGgGUGUG-CUGCcUUA------------CGCCGAGG- -5'
28016 3' -57.5 NC_005887.1 + 8057 0.71 0.278829
Target:  5'- gCCGCCCGCagucagccgcacgGCGACGGcAUGCGcaagCCg -3'
miRNA:   3'- -GGCGGGUG-------------UGCUGCCuUACGCcga-GG- -5'
28016 3' -57.5 NC_005887.1 + 14878 0.72 0.265828
Target:  5'- gCGCaCCGCGCGGCaGAAUGCGccaGCUgCu -3'
miRNA:   3'- gGCG-GGUGUGCUGcCUUACGC---CGAgG- -5'
28016 3' -57.5 NC_005887.1 + 25492 0.72 0.250752
Target:  5'- gCCGUCCGCGCcGCGGuacaccucgcggauGAUGuCGcGCUCCa -3'
miRNA:   3'- -GGCGGGUGUGcUGCC--------------UUAC-GC-CGAGG- -5'
28016 3' -57.5 NC_005887.1 + 37418 0.72 0.240067
Target:  5'- aCUGCCUGCACGccagguGCGGAGUggagcGCGGCgcuugCCu -3'
miRNA:   3'- -GGCGGGUGUGC------UGCCUUA-----CGCCGa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.