miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28017 3' -58.2 NC_005887.1 + 2957 0.76 0.117323
Target:  5'- cGCCGCGaCCAUCCUCGcCG-GCGacUCCAc -3'
miRNA:   3'- -UGGUGC-GGUAGGAGCuGCuCGC--AGGU- -5'
28017 3' -58.2 NC_005887.1 + 8437 0.66 0.464679
Target:  5'- cGCCGCaGCgAUCCgcgucaacgCGAuCGAGCGcCCGg -3'
miRNA:   3'- -UGGUG-CGgUAGGa--------GCU-GCUCGCaGGU- -5'
28017 3' -58.2 NC_005887.1 + 31276 0.67 0.425698
Target:  5'- gGCCGCGUCGaucgCCUCGuCGAGCucgaCCGg -3'
miRNA:   3'- -UGGUGCGGUa---GGAGCuGCUCGca--GGU- -5'
28017 3' -58.2 NC_005887.1 + 15261 0.67 0.416261
Target:  5'- aGCCGCaGUg--CUgcgCGGCGAGCGUCCGc -3'
miRNA:   3'- -UGGUG-CGguaGGa--GCUGCUCGCAGGU- -5'
28017 3' -58.2 NC_005887.1 + 35062 0.68 0.388731
Target:  5'- gUCGCuGCCGUCgUCGGCGGGCGcgacUUCGa -3'
miRNA:   3'- uGGUG-CGGUAGgAGCUGCUCGC----AGGU- -5'
28017 3' -58.2 NC_005887.1 + 27346 0.68 0.379824
Target:  5'- cGCCACGCgCAgcggCgCgcaGACGAGCGUCg- -3'
miRNA:   3'- -UGGUGCG-GUa---G-Gag-CUGCUCGCAGgu -5'
28017 3' -58.2 NC_005887.1 + 34627 0.68 0.353934
Target:  5'- aGCCAuuCGCCGUUCgcgUCGACGAGgCGcgCCGg -3'
miRNA:   3'- -UGGU--GCGGUAGG---AGCUGCUC-GCa-GGU- -5'
28017 3' -58.2 NC_005887.1 + 19207 0.68 0.353934
Target:  5'- gGCgGCGCgGUUa-CGACGAGCGUCg- -3'
miRNA:   3'- -UGgUGCGgUAGgaGCUGCUCGCAGgu -5'
28017 3' -58.2 NC_005887.1 + 6563 0.69 0.329315
Target:  5'- cGCCGCGCUAcaaCUCGuuGAGCG-CCGa -3'
miRNA:   3'- -UGGUGCGGUag-GAGCugCUCGCaGGU- -5'
28017 3' -58.2 NC_005887.1 + 30034 0.75 0.134865
Target:  5'- cGCCgACGCCAcCCUCauaGGCGAGCG-CCAg -3'
miRNA:   3'- -UGG-UGCGGUaGGAG---CUGCUCGCaGGU- -5'
28017 3' -58.2 NC_005887.1 + 40596 0.74 0.163486
Target:  5'- aACC-CGCgGuUCCUCGACGAGCGUgUg -3'
miRNA:   3'- -UGGuGCGgU-AGGAGCUGCUCGCAgGu -5'
28017 3' -58.2 NC_005887.1 + 31342 0.73 0.192249
Target:  5'- gACCGgGCCGUCgUCGAUGGcccaCGUCCAg -3'
miRNA:   3'- -UGGUgCGGUAGgAGCUGCUc---GCAGGU- -5'
28017 3' -58.2 NC_005887.1 + 33423 0.72 0.219519
Target:  5'- uACCGCGaCCGagcagacgaUCCUCGACGAGC-UUCGc -3'
miRNA:   3'- -UGGUGC-GGU---------AGGAGCUGCUCGcAGGU- -5'
28017 3' -58.2 NC_005887.1 + 9241 0.71 0.225354
Target:  5'- aACUGCGCCG-CgUCGGCGAucGCGUCUAu -3'
miRNA:   3'- -UGGUGCGGUaGgAGCUGCU--CGCAGGU- -5'
28017 3' -58.2 NC_005887.1 + 34939 0.71 0.243653
Target:  5'- uGCCGuCGCCGgcuucgaaCUCGGCGGGCGUgCGc -3'
miRNA:   3'- -UGGU-GCGGUag------GAGCUGCUCGCAgGU- -5'
28017 3' -58.2 NC_005887.1 + 31363 1.08 0.000458
Target:  5'- cACCACGCCAUCCUCGACGAGCGUCCAg -3'
miRNA:   3'- -UGGUGCGGUAGGAGCUGCUCGCAGGU- -5'
28017 3' -58.2 NC_005887.1 + 40468 0.66 0.492014
Target:  5'- cUCGgGCUucguuUCCUCGGCGAGCacauagaaccagugGUCCGa -3'
miRNA:   3'- uGGUgCGGu----AGGAGCUGCUCG--------------CAGGU- -5'
28017 3' -58.2 NC_005887.1 + 12814 0.66 0.484855
Target:  5'- uGCCAgGCCGUCgCgcgCGACGuGCuGUUCu -3'
miRNA:   3'- -UGGUgCGGUAG-Ga--GCUGCuCG-CAGGu -5'
28017 3' -58.2 NC_005887.1 + 41288 0.66 0.484855
Target:  5'- -gCACGCgGUCCuUCGACu-GCGUCUu -3'
miRNA:   3'- ugGUGCGgUAGG-AGCUGcuCGCAGGu -5'
28017 3' -58.2 NC_005887.1 + 1867 0.66 0.484855
Target:  5'- gUCGCGCCAcgCCUCGuaauCGAGCucGUCg- -3'
miRNA:   3'- uGGUGCGGUa-GGAGCu---GCUCG--CAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.