Results 41 - 60 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 23691 | 0.69 | 0.328537 |
Target: 5'- --cGaGACuGCGCGCAGCGGCUGgaacaGCGUc -3' miRNA: 3'- gcaC-CUG-CGCGUGUUGUCGACg----CGCA- -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 27355 | 0.7 | 0.312694 |
Target: 5'- --cGGGCG-GCACGccuGCGGcCUGCGCGg -3' miRNA: 3'- gcaCCUGCgCGUGU---UGUC-GACGCGCa -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 17392 | 0.7 | 0.304993 |
Target: 5'- uCGcGGcCGCGCGCAagGCGGCccGCGCGc -3' miRNA: 3'- -GCaCCuGCGCGUGU--UGUCGa-CGCGCa -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 1492 | 0.7 | 0.304993 |
Target: 5'- ---cGACGCGCGCGGCGGCUuCGCc- -3' miRNA: 3'- gcacCUGCGCGUGUUGUCGAcGCGca -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 7849 | 0.7 | 0.300442 |
Target: 5'- -aUGGGCGUGCaguaccacgguccggGCGACAGCUucucggGCGCGa -3' miRNA: 3'- gcACCUGCGCG---------------UGUUGUCGA------CGCGCa -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 15102 | 0.71 | 0.268671 |
Target: 5'- aCGcGGGCcgGCGCGCGauGCAGUUGCGCc- -3' miRNA: 3'- -GCaCCUG--CGCGUGU--UGUCGACGCGca -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 13943 | 0.67 | 0.435627 |
Target: 5'- ----uGCGCGCGCu-CGGCUGCGaCGUg -3' miRNA: 3'- gcaccUGCGCGUGuuGUCGACGC-GCA- -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 41920 | 0.67 | 0.445428 |
Target: 5'- --aGGGuucgaGCGCAgCAACAGCgggcgGCGCGg -3' miRNA: 3'- gcaCCUg----CGCGU-GUUGUCGa----CGCGCa -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 34915 | 0.66 | 0.524658 |
Target: 5'- ---cGACGCGCACGccagcccaaacgagGCGGCgGCGgGUg -3' miRNA: 3'- gcacCUGCGCGUGU--------------UGUCGaCGCgCA- -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 18949 | 0.66 | 0.517213 |
Target: 5'- ---cGACGCGCuGCuGCGGCUGCcaGCGg -3' miRNA: 3'- gcacCUGCGCG-UGuUGUCGACG--CGCa -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 39165 | 0.66 | 0.517213 |
Target: 5'- uCGcUGucCGgGCGCGGCAGCUGCcCGa -3' miRNA: 3'- -GC-ACcuGCgCGUGUUGUCGACGcGCa -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 28160 | 0.66 | 0.517213 |
Target: 5'- --aGGcCGCGCcCGACAGC-GCGUGc -3' miRNA: 3'- gcaCCuGCGCGuGUUGUCGaCGCGCa -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 11190 | 0.66 | 0.517213 |
Target: 5'- aGUGG-CGCGaCACGAUGGUgcaggcguaUGCGCa- -3' miRNA: 3'- gCACCuGCGC-GUGUUGUCG---------ACGCGca -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 15909 | 0.66 | 0.517213 |
Target: 5'- aGUcGGAucuCGCGCgGCuGCAGC-GCGCGUu -3' miRNA: 3'- gCA-CCU---GCGCG-UGuUGUCGaCGCGCA- -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 41816 | 0.66 | 0.496184 |
Target: 5'- --cGGcGCgGCGCGCGGCGGCcGaCGCGUu -3' miRNA: 3'- gcaCC-UG-CGCGUGUUGUCGaC-GCGCA- -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 14103 | 0.66 | 0.485815 |
Target: 5'- aGUGGugaaGCGCcgcucGCGA-AGCUGCGCGc -3' miRNA: 3'- gCACCug--CGCG-----UGUUgUCGACGCGCa -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 28451 | 0.66 | 0.485815 |
Target: 5'- aCGUGccacgaaugccGACGCGCACGAgccggUAGCU-CGCGa -3' miRNA: 3'- -GCAC-----------CUGCGCGUGUU-----GUCGAcGCGCa -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 19537 | 0.66 | 0.472491 |
Target: 5'- aCGUucGGAUGCGCcgcguagcucgugaACAACAGCgGcCGCGc -3' miRNA: 3'- -GCA--CCUGCGCG--------------UGUUGUCGaC-GCGCa -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 21047 | 0.67 | 0.469443 |
Target: 5'- gGUGGGCGUGCccgugaaugugggcgACGcCAGCaGCGCa- -3' miRNA: 3'- gCACCUGCGCG---------------UGUuGUCGaCGCGca -5' |
|||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 4132 | 0.67 | 0.455352 |
Target: 5'- --cGGccACGCGCAa---GGCUGCGCGc -3' miRNA: 3'- gcaCC--UGCGCGUguugUCGACGCGCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home