miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28017 5' -57.5 NC_005887.1 + 13943 0.67 0.435627
Target:  5'- ----uGCGCGCGCu-CGGCUGCGaCGUg -3'
miRNA:   3'- gcaccUGCGCGUGuuGUCGACGC-GCA- -5'
28017 5' -57.5 NC_005887.1 + 26062 0.67 0.435627
Target:  5'- gGUGGugcuccuggucaGCGCGU-CAGCGGCccGCGCGg -3'
miRNA:   3'- gCACC------------UGCGCGuGUUGUCGa-CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 39174 0.67 0.435627
Target:  5'- --cGGACGCGCGCGagaucccgaACAcgucggccaacuGCUGCaGCGUc -3'
miRNA:   3'- gcaCCUGCGCGUGU---------UGU------------CGACG-CGCA- -5'
28017 5' -57.5 NC_005887.1 + 41920 0.67 0.445428
Target:  5'- --aGGGuucgaGCGCAgCAACAGCgggcgGCGCGg -3'
miRNA:   3'- gcaCCUg----CGCGU-GUUGUCGa----CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 12716 0.67 0.445428
Target:  5'- aCGcUGGuCGCGCAgCAGCAGaaUGCGCu- -3'
miRNA:   3'- -GC-ACCuGCGCGU-GUUGUCg-ACGCGca -5'
28017 5' -57.5 NC_005887.1 + 4132 0.67 0.455352
Target:  5'- --cGGccACGCGCAa---GGCUGCGCGc -3'
miRNA:   3'- gcaCC--UGCGCGUguugUCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 21047 0.67 0.469443
Target:  5'- gGUGGGCGUGCccgugaaugugggcgACGcCAGCaGCGCa- -3'
miRNA:   3'- gCACCUGCGCG---------------UGUuGUCGaCGCGca -5'
28017 5' -57.5 NC_005887.1 + 19537 0.66 0.472491
Target:  5'- aCGUucGGAUGCGCcgcguagcucgugaACAACAGCgGcCGCGc -3'
miRNA:   3'- -GCA--CCUGCGCG--------------UGUUGUCGaC-GCGCa -5'
28017 5' -57.5 NC_005887.1 + 32753 0.66 0.474529
Target:  5'- gCGUGcgcgccGGCGCGCGCcauGCAGCcggcucgUGCGCa- -3'
miRNA:   3'- -GCAC------CUGCGCGUGu--UGUCG-------ACGCGca -5'
28017 5' -57.5 NC_005887.1 + 23236 0.66 0.47555
Target:  5'- --cGGcACGCGaGCGGCGGCggucgGCGCGc -3'
miRNA:   3'- gcaCC-UGCGCgUGUUGUCGa----CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 17043 0.66 0.47555
Target:  5'- --cGGAUGCGCAgCGGCAcGCUuGgGCGg -3'
miRNA:   3'- gcaCCUGCGCGU-GUUGU-CGA-CgCGCa -5'
28017 5' -57.5 NC_005887.1 + 35200 0.66 0.485815
Target:  5'- aCGgcgGGGCGauucguuGCGCAGCAGCuugucggccUGCGUGg -3'
miRNA:   3'- -GCa--CCUGCg------CGUGUUGUCG---------ACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 14103 0.66 0.485815
Target:  5'- aGUGGugaaGCGCcgcucGCGA-AGCUGCGCGc -3'
miRNA:   3'- gCACCug--CGCG-----UGUUgUCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 28451 0.66 0.485815
Target:  5'- aCGUGccacgaaugccGACGCGCACGAgccggUAGCU-CGCGa -3'
miRNA:   3'- -GCAC-----------CUGCGCGUGUU-----GUCGAcGCGCa -5'
28017 5' -57.5 NC_005887.1 + 41816 0.66 0.496184
Target:  5'- --cGGcGCgGCGCGCGGCGGCcGaCGCGUu -3'
miRNA:   3'- gcaCC-UG-CGCGUGUUGUCGaC-GCGCA- -5'
28017 5' -57.5 NC_005887.1 + 4662 0.66 0.496184
Target:  5'- --aGcGACGCGCA-GACcGCUGCGCa- -3'
miRNA:   3'- gcaC-CUGCGCGUgUUGuCGACGCGca -5'
28017 5' -57.5 NC_005887.1 + 37097 0.66 0.496184
Target:  5'- --cGGGCGaGCACAGCcucGGCgaucGCGCGg -3'
miRNA:   3'- gcaCCUGCgCGUGUUG---UCGa---CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 40689 0.66 0.506652
Target:  5'- -cUGG-CGCGCGCGcACGGCUG-GCa- -3'
miRNA:   3'- gcACCuGCGCGUGU-UGUCGACgCGca -5'
28017 5' -57.5 NC_005887.1 + 28160 0.66 0.517213
Target:  5'- --aGGcCGCGCcCGACAGC-GCGUGc -3'
miRNA:   3'- gcaCCuGCGCGuGUUGUCGaCGCGCa -5'
28017 5' -57.5 NC_005887.1 + 11190 0.66 0.517213
Target:  5'- aGUGG-CGCGaCACGAUGGUgcaggcguaUGCGCa- -3'
miRNA:   3'- gCACCuGCGC-GUGUUGUCG---------ACGCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.