Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 26414 | 0.69 | 0.358528 |
Target: 5'- gCGUGGccgGCGCaucgauuccggcccGCGCGGaacgcaggucggcCAGCUGCGCGUc -3' miRNA: 3'- -GCACC---UGCG--------------CGUGUU-------------GUCGACGCGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 38537 | 0.69 | 0.353399 |
Target: 5'- gGUGGGCGCuuACAcCAGCggGCGCc- -3' miRNA: 3'- gCACCUGCGcgUGUuGUCGa-CGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 26334 | 0.69 | 0.344966 |
Target: 5'- cCGUGGcCgGCGCugGcCGGgUGCGCGa -3' miRNA: 3'- -GCACCuG-CGCGugUuGUCgACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 39901 | 0.69 | 0.344966 |
Target: 5'- gGUGGACcagcauacgguGCGCGCAGaucgAGCcggGCGCGUc -3' miRNA: 3'- gCACCUG-----------CGCGUGUUg---UCGa--CGCGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 41442 | 0.69 | 0.344966 |
Target: 5'- uCGUGGGCuauGCGCugcuCGGCAcGCcGCGCGa -3' miRNA: 3'- -GCACCUG---CGCGu---GUUGU-CGaCGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 1489 | 0.69 | 0.344966 |
Target: 5'- gCGUGcGGCGCucGCGCGgcGCGGCcGUGCGg -3' miRNA: 3'- -GCAC-CUGCG--CGUGU--UGUCGaCGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 27404 | 0.69 | 0.336679 |
Target: 5'- -uUGcGGCGCGUcguACGGCAGC-GCGCGg -3' miRNA: 3'- gcAC-CUGCGCG---UGUUGUCGaCGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 23691 | 0.69 | 0.328537 |
Target: 5'- --cGaGACuGCGCGCAGCGGCUGgaacaGCGUc -3' miRNA: 3'- gcaC-CUG-CGCGUGUUGUCGACg----CGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 27355 | 0.7 | 0.312694 |
Target: 5'- --cGGGCG-GCACGccuGCGGcCUGCGCGg -3' miRNA: 3'- gcaCCUGCgCGUGU---UGUC-GACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 1492 | 0.7 | 0.304993 |
Target: 5'- ---cGACGCGCGCGGCGGCUuCGCc- -3' miRNA: 3'- gcacCUGCGCGUGUUGUCGAcGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 17392 | 0.7 | 0.304993 |
Target: 5'- uCGcGGcCGCGCGCAagGCGGCccGCGCGc -3' miRNA: 3'- -GCaCCuGCGCGUGU--UGUCGa-CGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 7849 | 0.7 | 0.300442 |
Target: 5'- -aUGGGCGUGCaguaccacgguccggGCGACAGCUucucggGCGCGa -3' miRNA: 3'- gcACCUGCGCG---------------UGUUGUCGA------CGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 18119 | 0.7 | 0.297438 |
Target: 5'- --cGGACGCGCuguacGCAAcCGGCgaaGCGCGg -3' miRNA: 3'- gcaCCUGCGCG-----UGUU-GUCGa--CGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 15102 | 0.71 | 0.268671 |
Target: 5'- aCGcGGGCcgGCGCGCGauGCAGUUGCGCc- -3' miRNA: 3'- -GCaCCUG--CGCGUGU--UGUCGACGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 12620 | 0.71 | 0.261164 |
Target: 5'- cCGUGcACGCGCggcgcgugauccuGCGACgcgacggcgaguGGCUGCGCGUg -3' miRNA: 3'- -GCACcUGCGCG-------------UGUUG------------UCGACGCGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 5343 | 0.71 | 0.248601 |
Target: 5'- aCGUGuuCGCGUACGGC--CUGCGCGUg -3' miRNA: 3'- -GCACcuGCGCGUGUUGucGACGCGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 2559 | 0.71 | 0.248601 |
Target: 5'- aGUGacGACGCGCGCAACGaucgGCGCGa -3' miRNA: 3'- gCAC--CUGCGCGUGUUGUcga-CGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 10353 | 0.71 | 0.248601 |
Target: 5'- aCGUGGACGCcgguaucacGUACAACGGCgUGC-CGa -3' miRNA: 3'- -GCACCUGCG---------CGUGUUGUCG-ACGcGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 22951 | 0.71 | 0.242191 |
Target: 5'- uCGcGGACcgauaCGCucuGCGGCAGCUGCGCGa -3' miRNA: 3'- -GCaCCUGc----GCG---UGUUGUCGACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 6043 | 0.72 | 0.223787 |
Target: 5'- cCG-GGugGUGCugGugGCAGCgGCGCGg -3' miRNA: 3'- -GCaCCugCGCGugU--UGUCGaCGCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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