Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28017 | 5' | -57.5 | NC_005887.1 | + | 23691 | 0.69 | 0.328537 |
Target: 5'- --cGaGACuGCGCGCAGCGGCUGgaacaGCGUc -3' miRNA: 3'- gcaC-CUG-CGCGUGUUGUCGACg----CGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 27404 | 0.69 | 0.336679 |
Target: 5'- -uUGcGGCGCGUcguACGGCAGC-GCGCGg -3' miRNA: 3'- gcAC-CUGCGCG---UGUUGUCGaCGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 41442 | 0.69 | 0.344966 |
Target: 5'- uCGUGGGCuauGCGCugcuCGGCAcGCcGCGCGa -3' miRNA: 3'- -GCACCUG---CGCGu---GUUGU-CGaCGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 26334 | 0.69 | 0.344966 |
Target: 5'- cCGUGGcCgGCGCugGcCGGgUGCGCGa -3' miRNA: 3'- -GCACCuG-CGCGugUuGUCgACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 39901 | 0.69 | 0.344966 |
Target: 5'- gGUGGACcagcauacgguGCGCGCAGaucgAGCcggGCGCGUc -3' miRNA: 3'- gCACCUG-----------CGCGUGUUg---UCGa--CGCGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 1489 | 0.69 | 0.344966 |
Target: 5'- gCGUGcGGCGCucGCGCGgcGCGGCcGUGCGg -3' miRNA: 3'- -GCAC-CUGCG--CGUGU--UGUCGaCGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 38537 | 0.69 | 0.353399 |
Target: 5'- gGUGGGCGCuuACAcCAGCggGCGCc- -3' miRNA: 3'- gCACCUGCGcgUGUuGUCGa-CGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 26414 | 0.69 | 0.358528 |
Target: 5'- gCGUGGccgGCGCaucgauuccggcccGCGCGGaacgcaggucggcCAGCUGCGCGUc -3' miRNA: 3'- -GCACC---UGCG--------------CGUGUU-------------GUCGACGCGCA- -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 29194 | 0.69 | 0.361976 |
Target: 5'- --aGGAUcUGCGCGGCcuuaAGCUGCGCGa -3' miRNA: 3'- gcaCCUGcGCGUGUUG----UCGACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 5415 | 0.69 | 0.361976 |
Target: 5'- --cGGGCG-GCGCcGCAGCgaccgGCGCGa -3' miRNA: 3'- gcaCCUGCgCGUGuUGUCGa----CGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 6945 | 0.69 | 0.365447 |
Target: 5'- uCGUGGGCgaaggccgugcgcggGCGCaucgaGCAugAGCUGUGCa- -3' miRNA: 3'- -GCACCUG---------------CGCG-----UGUugUCGACGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 26229 | 0.68 | 0.370697 |
Target: 5'- gGUGGuuGCGCGCGGC-GCaGCGCc- -3' miRNA: 3'- gCACCugCGCGUGUUGuCGaCGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 40123 | 0.68 | 0.379561 |
Target: 5'- --aGGACGCcUACAGCGugcggugcgcGCUGCGCGc -3' miRNA: 3'- gcaCCUGCGcGUGUUGU----------CGACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 32522 | 0.68 | 0.379561 |
Target: 5'- -uUGGcCGCGCugAcCGGCUGCGaCGc -3' miRNA: 3'- gcACCuGCGCGugUuGUCGACGC-GCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 34251 | 0.68 | 0.397709 |
Target: 5'- ---cGGCGaGCGCGGCgAGCUGCGCGc -3' miRNA: 3'- gcacCUGCgCGUGUUG-UCGACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 17174 | 0.68 | 0.406989 |
Target: 5'- gCGUGGGaGCGCGCGaacGCGGCcGCacGCGg -3' miRNA: 3'- -GCACCUgCGCGUGU---UGUCGaCG--CGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 20146 | 0.68 | 0.416404 |
Target: 5'- uGUgGGAUGCGCAaacgucaAGCGGCgGCGCc- -3' miRNA: 3'- gCA-CCUGCGCGUg------UUGUCGaCGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 41962 | 0.68 | 0.416404 |
Target: 5'- gCGUGGuGCGUGCGCGGCGcGCU-CGCc- -3' miRNA: 3'- -GCACC-UGCGCGUGUUGU-CGAcGCGca -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 2426 | 0.67 | 0.425951 |
Target: 5'- uCGUcGACGCGCcCGGCucgauCUGCGCGg -3' miRNA: 3'- -GCAcCUGCGCGuGUUGuc---GACGCGCa -5' |
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28017 | 5' | -57.5 | NC_005887.1 | + | 12465 | 0.67 | 0.425951 |
Target: 5'- aCGguucGACGCGCGCuucuCAGCUcGCGCu- -3' miRNA: 3'- -GCac--CUGCGCGUGuu--GUCGA-CGCGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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