miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28017 5' -57.5 NC_005887.1 + 14696 0.73 0.190538
Target:  5'- ----cGCGCGCGCGGCAGCUcaGCGCGc -3'
miRNA:   3'- gcaccUGCGCGUGUUGUCGA--CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 14850 0.74 0.170851
Target:  5'- uCGcGGGCGUGCACAccGCAGCaacaGCGCGc -3'
miRNA:   3'- -GCaCCUGCGCGUGU--UGUCGa---CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 15102 0.71 0.268671
Target:  5'- aCGcGGGCcgGCGCGCGauGCAGUUGCGCc- -3'
miRNA:   3'- -GCaCCUG--CGCGUGU--UGUCGACGCGca -5'
28017 5' -57.5 NC_005887.1 + 15909 0.66 0.517213
Target:  5'- aGUcGGAucuCGCGCgGCuGCAGC-GCGCGUu -3'
miRNA:   3'- gCA-CCU---GCGCG-UGuUGUCGaCGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 17043 0.66 0.47555
Target:  5'- --cGGAUGCGCAgCGGCAcGCUuGgGCGg -3'
miRNA:   3'- gcaCCUGCGCGU-GUUGU-CGA-CgCGCa -5'
28017 5' -57.5 NC_005887.1 + 17174 0.68 0.406989
Target:  5'- gCGUGGGaGCGCGCGaacGCGGCcGCacGCGg -3'
miRNA:   3'- -GCACCUgCGCGUGU---UGUCGaCG--CGCa -5'
28017 5' -57.5 NC_005887.1 + 17392 0.7 0.304993
Target:  5'- uCGcGGcCGCGCGCAagGCGGCccGCGCGc -3'
miRNA:   3'- -GCaCCuGCGCGUGU--UGUCGa-CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 17621 0.66 0.517213
Target:  5'- -aUGGAaacgcUGCGCACGACGGUcaGCGcCGUg -3'
miRNA:   3'- gcACCU-----GCGCGUGUUGUCGa-CGC-GCA- -5'
28017 5' -57.5 NC_005887.1 + 17891 0.66 0.526792
Target:  5'- --cGGcCGCGC-CAACGGCcugaugcUGCGUGUc -3'
miRNA:   3'- gcaCCuGCGCGuGUUGUCG-------ACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 18119 0.7 0.297438
Target:  5'- --cGGACGCGCuguacGCAAcCGGCgaaGCGCGg -3'
miRNA:   3'- gcaCCUGCGCG-----UGUU-GUCGa--CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 18949 0.66 0.517213
Target:  5'- ---cGACGCGCuGCuGCGGCUGCcaGCGg -3'
miRNA:   3'- gcacCUGCGCG-UGuUGUCGACG--CGCa -5'
28017 5' -57.5 NC_005887.1 + 19537 0.66 0.472491
Target:  5'- aCGUucGGAUGCGCcgcguagcucgugaACAACAGCgGcCGCGc -3'
miRNA:   3'- -GCA--CCUGCGCG--------------UGUUGUCGaC-GCGCa -5'
28017 5' -57.5 NC_005887.1 + 20146 0.68 0.416404
Target:  5'- uGUgGGAUGCGCAaacgucaAGCGGCgGCGCc- -3'
miRNA:   3'- gCA-CCUGCGCGUg------UUGUCGaCGCGca -5'
28017 5' -57.5 NC_005887.1 + 21047 0.67 0.469443
Target:  5'- gGUGGGCGUGCccgugaaugugggcgACGcCAGCaGCGCa- -3'
miRNA:   3'- gCACCUGCGCG---------------UGUuGUCGaCGCGca -5'
28017 5' -57.5 NC_005887.1 + 22951 0.71 0.242191
Target:  5'- uCGcGGACcgauaCGCucuGCGGCAGCUGCGCGa -3'
miRNA:   3'- -GCaCCUGc----GCG---UGUUGUCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 23236 0.66 0.47555
Target:  5'- --cGGcACGCGaGCGGCGGCggucgGCGCGc -3'
miRNA:   3'- gcaCC-UGCGCgUGUUGUCGa----CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 23691 0.69 0.328537
Target:  5'- --cGaGACuGCGCGCAGCGGCUGgaacaGCGUc -3'
miRNA:   3'- gcaC-CUG-CGCGUGUUGUCGACg----CGCA- -5'
28017 5' -57.5 NC_005887.1 + 26062 0.67 0.435627
Target:  5'- gGUGGugcuccuggucaGCGCGU-CAGCGGCccGCGCGg -3'
miRNA:   3'- gCACC------------UGCGCGuGUUGUCGa-CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 26229 0.68 0.370697
Target:  5'- gGUGGuuGCGCGCGGC-GCaGCGCc- -3'
miRNA:   3'- gCACCugCGCGUGUUGuCGaCGCGca -5'
28017 5' -57.5 NC_005887.1 + 26334 0.69 0.344966
Target:  5'- cCGUGGcCgGCGCugGcCGGgUGCGCGa -3'
miRNA:   3'- -GCACCuG-CGCGugUuGUCgACGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.