Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 5344 | 0.67 | 0.397227 |
Target: 5'- cGUGUUcGCguaCGGCCUGCgCGUGcUCGCCg -3' miRNA: 3'- cCACGA-CGa--GCCGGACG-GUGC-AGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 36833 | 0.67 | 0.388223 |
Target: 5'- cGUGcCUGCUgCGGCCggUGCUGCG--GCCg -3' miRNA: 3'- cCAC-GACGA-GCCGG--ACGGUGCagUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 39649 | 0.67 | 0.382886 |
Target: 5'- --cGCgGCUCGGCCgcuUGCCgcccguacgcuucacGCG-CACCa -3' miRNA: 3'- ccaCGaCGAGCCGG---ACGG---------------UGCaGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 16142 | 0.67 | 0.379355 |
Target: 5'- --aGCUGCa-GGCCgGCCACcGcCGCCc -3' miRNA: 3'- ccaCGACGagCCGGaCGGUG-CaGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 24651 | 0.67 | 0.378475 |
Target: 5'- -uUGUUGUagcCGGCCgucacgaacaucgUGCCgACGUCGCCa -3' miRNA: 3'- ccACGACGa--GCCGG-------------ACGG-UGCAGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 32850 | 0.68 | 0.370622 |
Target: 5'- cGGUGUucggcagcaUGCcggggUCGGCCggGUCGuuCGUCGCCa -3' miRNA: 3'- -CCACG---------ACG-----AGCCGGa-CGGU--GCAGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 37687 | 0.68 | 0.362029 |
Target: 5'- cGU-CUGCgcagCGGUCUG-CGCGUCGCUg -3' miRNA: 3'- cCAcGACGa---GCCGGACgGUGCAGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 373 | 0.68 | 0.362029 |
Target: 5'- cGUGCUGCUgauaGGCgagcgcGCCGCGcacgCACCa -3' miRNA: 3'- cCACGACGAg---CCGga----CGGUGCa---GUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 1582 | 0.66 | 0.463838 |
Target: 5'- --cGCcgGCUCGGCg-GCgCGCGgcgCGCCa -3' miRNA: 3'- ccaCGa-CGAGCCGgaCG-GUGCa--GUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home