miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28018 3' -58.7 NC_005887.1 + 373 0.68 0.362029
Target:  5'- cGUGCUGCUgauaGGCgagcgcGCCGCGcacgCACCa -3'
miRNA:   3'- cCACGACGAg---CCGga----CGGUGCa---GUGG- -5'
28018 3' -58.7 NC_005887.1 + 30159 0.69 0.313422
Target:  5'- cGGcGCUGUccuucgCGGUCUgcauguucugcaGCCACGUCACg -3'
miRNA:   3'- -CCaCGACGa-----GCCGGA------------CGGUGCAGUGg -5'
28018 3' -58.7 NC_005887.1 + 22787 0.69 0.305818
Target:  5'- --cGCUGCUCGacguGCCUGCaACGUaaucgaCGCCg -3'
miRNA:   3'- ccaCGACGAGC----CGGACGgUGCA------GUGG- -5'
28018 3' -58.7 NC_005887.1 + 33944 0.7 0.283858
Target:  5'- uGGUcgUGCUCGGCCcacgcGCCuuGUCGCUu -3'
miRNA:   3'- -CCAcgACGAGCCGGa----CGGugCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 25839 0.7 0.25006
Target:  5'- cGGcgGCgacGCgaUCGGCCUGCgACaUCGCCg -3'
miRNA:   3'- -CCa-CGa--CG--AGCCGGACGgUGcAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 12475 0.71 0.237499
Target:  5'- --cGCcguacGCUCGGCCUGCCGCaGgacguguucaUCGCCu -3'
miRNA:   3'- ccaCGa----CGAGCCGGACGGUG-C----------AGUGG- -5'
28018 3' -58.7 NC_005887.1 + 33044 0.71 0.237499
Target:  5'- uGUGCgucgGCguuUCGGugcccguaaCCUGCgGCGUCGCCg -3'
miRNA:   3'- cCACGa---CG---AGCC---------GGACGgUGCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 28926 0.71 0.231419
Target:  5'- cGGUGCgccGCUcgucgcagcagCGGCUUGCCgccgACGUcCGCCg -3'
miRNA:   3'- -CCACGa--CGA-----------GCCGGACGG----UGCA-GUGG- -5'
28018 3' -58.7 NC_005887.1 + 11205 0.71 0.230818
Target:  5'- uGGUGCaggcguaUGCgcaCGGCCUGCC-CGgcaagcUCGCCc -3'
miRNA:   3'- -CCACG-------ACGa--GCCGGACGGuGC------AGUGG- -5'
28018 3' -58.7 NC_005887.1 + 37687 0.68 0.362029
Target:  5'- cGU-CUGCgcagCGGUCUG-CGCGUCGCUg -3'
miRNA:   3'- cCAcGACGa---GCCGGACgGUGCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 32850 0.68 0.370622
Target:  5'- cGGUGUucggcagcaUGCcggggUCGGCCggGUCGuuCGUCGCCa -3'
miRNA:   3'- -CCACG---------ACG-----AGCCGGa-CGGU--GCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 24651 0.67 0.378475
Target:  5'- -uUGUUGUagcCGGCCgucacgaacaucgUGCCgACGUCGCCa -3'
miRNA:   3'- ccACGACGa--GCCGG-------------ACGG-UGCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 40849 0.66 0.453959
Target:  5'- cGUGUUccGCaCGGCCgcGCCGCGcgagCGCCg -3'
miRNA:   3'- cCACGA--CGaGCCGGa-CGGUGCa---GUGG- -5'
28018 3' -58.7 NC_005887.1 + 24254 0.66 0.434551
Target:  5'- cGGUGUcagGUauUCGGCguccccauacUUGCCggGCGUCGCCu -3'
miRNA:   3'- -CCACGa--CG--AGCCG----------GACGG--UGCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 26482 0.66 0.434551
Target:  5'- --aGCUGCUggUGcGCCUGCUGCG-CGCg -3'
miRNA:   3'- ccaCGACGA--GC-CGGACGGUGCaGUGg -5'
28018 3' -58.7 NC_005887.1 + 39985 0.67 0.406365
Target:  5'- cGUGUcuucGUcgUCGGCCUGCgagcgCugGUCGCCc -3'
miRNA:   3'- cCACGa---CG--AGCCGGACG-----GugCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 5344 0.67 0.397227
Target:  5'- cGUGUUcGCguaCGGCCUGCgCGUGcUCGCCg -3'
miRNA:   3'- cCACGA-CGa--GCCGGACG-GUGC-AGUGG- -5'
28018 3' -58.7 NC_005887.1 + 36833 0.67 0.388223
Target:  5'- cGUGcCUGCUgCGGCCggUGCUGCG--GCCg -3'
miRNA:   3'- cCAC-GACGA-GCCGG--ACGGUGCagUGG- -5'
28018 3' -58.7 NC_005887.1 + 39649 0.67 0.382886
Target:  5'- --cGCgGCUCGGCCgcuUGCCgcccguacgcuucacGCG-CACCa -3'
miRNA:   3'- ccaCGaCGAGCCGG---ACGG---------------UGCaGUGG- -5'
28018 3' -58.7 NC_005887.1 + 16142 0.67 0.379355
Target:  5'- --aGCUGCa-GGCCgGCCACcGcCGCCc -3'
miRNA:   3'- ccaCGACGagCCGGaCGGUG-CaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.