Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 41608 | 0.72 | 0.192458 |
Target: 5'- aGGUGCgGCggccggcgCGGCCcgugaggaucUGCUGCGUCugCg -3' miRNA: 3'- -CCACGaCGa-------GCCGG----------ACGGUGCAGugG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 18233 | 0.66 | 0.444196 |
Target: 5'- aGGUGaucGcCUCGGCCacGCCGgG-CACCg -3' miRNA: 3'- -CCACga-C-GAGCCGGa-CGGUgCaGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 41993 | 0.66 | 0.444196 |
Target: 5'- --aGCaGCaCGGCCUGCgGCccacgucgaguGUCGCCg -3' miRNA: 3'- ccaCGaCGaGCCGGACGgUG-----------CAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 680 | 0.66 | 0.452977 |
Target: 5'- aGGUGCUGCUgcucGCCgagucgaUGCUGC-UCGCCg -3' miRNA: 3'- -CCACGACGAgc--CGG-------ACGGUGcAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 22427 | 0.66 | 0.452977 |
Target: 5'- cGUGCUGCUguucugcaugUGGaUUGCCGucacgaacguguuCGUCACCg -3' miRNA: 3'- cCACGACGA----------GCCgGACGGU-------------GCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 29683 | 0.66 | 0.472824 |
Target: 5'- uGGcGCuUGCUUGGCagCUGCaCGCGcagccacUCGCCg -3' miRNA: 3'- -CCaCG-ACGAGCCG--GACG-GUGC-------AGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 33948 | 0.66 | 0.473828 |
Target: 5'- --gGC-GCUCGGCgaG-CACGUCGCg -3' miRNA: 3'- ccaCGaCGAGCCGgaCgGUGCAGUGg -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 18170 | 0.66 | 0.483925 |
Target: 5'- --aGCUGCUCGGCaUGauuCGCGaggaaggcgaguUCGCCg -3' miRNA: 3'- ccaCGACGAGCCGgACg--GUGC------------AGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 35337 | 0.66 | 0.483925 |
Target: 5'- --cGCcGCggCGGCCgGCCACGagcuUCACg -3' miRNA: 3'- ccaCGaCGa-GCCGGaCGGUGC----AGUGg -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 17724 | 0.66 | 0.440323 |
Target: 5'- aGGUGCcguucuucaagacGCUCGGCacgGCCGCGcggcugauggCGCCc -3' miRNA: 3'- -CCACGa------------CGAGCCGga-CGGUGCa---------GUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 35724 | 0.66 | 0.434551 |
Target: 5'- cGUGCaGCUCGGUC-GCgGuCGUgGCCc -3' miRNA: 3'- cCACGaCGAGCCGGaCGgU-GCAgUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 30732 | 0.67 | 0.425029 |
Target: 5'- --cGCUGCgUGGCCUucGCgACuUCGCCg -3' miRNA: 3'- ccaCGACGaGCCGGA--CGgUGcAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 5119 | 0.72 | 0.19765 |
Target: 5'- aGGUGCUcgccaaGCUCGGCaugaccgcgCUGCCcgACGUCGgCg -3' miRNA: 3'- -CCACGA------CGAGCCG---------GACGG--UGCAGUgG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 237 | 0.72 | 0.208401 |
Target: 5'- aGGUGCUGUUUGaCCUGCgGCGccUCgACCu -3' miRNA: 3'- -CCACGACGAGCcGGACGgUGC--AG-UGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 41454 | 0.71 | 0.237499 |
Target: 5'- --cGCUGCUCGGCaC-GCCGCGcgaggaucugcUCAUCa -3' miRNA: 3'- ccaCGACGAGCCG-GaCGGUGC-----------AGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 13104 | 0.71 | 0.243712 |
Target: 5'- aGUGCUGCagGGCgUGCCGaagguCGaCACCu -3' miRNA: 3'- cCACGACGagCCGgACGGU-----GCaGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 4232 | 0.7 | 0.269923 |
Target: 5'- cGUGCUGCUCGcGCCgacgcucgGCCGCa-CGCa -3' miRNA: 3'- cCACGACGAGC-CGGa-------CGGUGcaGUGg -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 16495 | 0.7 | 0.283858 |
Target: 5'- cGG-GCUGgUCGGCgaUGUCgcaggccgaucGCGUCGCCg -3' miRNA: 3'- -CCaCGACgAGCCGg-ACGG-----------UGCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 14647 | 0.67 | 0.379355 |
Target: 5'- --aGCcgGCgCGGUgCUGCC-CGUCGCCg -3' miRNA: 3'- ccaCGa-CGaGCCG-GACGGuGCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 23385 | 0.67 | 0.406365 |
Target: 5'- -uUGCUGCUC-GCgCUGCCGCuGgcaGCCu -3' miRNA: 3'- ccACGACGAGcCG-GACGGUG-Cag-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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