Results 1 - 20 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 237 | 0.72 | 0.208401 |
Target: 5'- aGGUGCUGUUUGaCCUGCgGCGccUCgACCu -3' miRNA: 3'- -CCACGACGAGCcGGACGgUGC--AG-UGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 373 | 0.68 | 0.362029 |
Target: 5'- cGUGCUGCUgauaGGCgagcgcGCCGCGcacgCACCa -3' miRNA: 3'- cCACGACGAg---CCGga----CGGUGCa---GUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 680 | 0.66 | 0.452977 |
Target: 5'- aGGUGCUGCUgcucGCCgagucgaUGCUGC-UCGCCg -3' miRNA: 3'- -CCACGACGAgc--CGG-------ACGGUGcAGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 1582 | 0.66 | 0.463838 |
Target: 5'- --cGCcgGCUCGGCg-GCgCGCGgcgCGCCa -3' miRNA: 3'- ccaCGa-CGAGCCGgaCG-GUGCa--GUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 4232 | 0.7 | 0.269923 |
Target: 5'- cGUGCUGCUCGcGCCgacgcucgGCCGCa-CGCa -3' miRNA: 3'- cCACGACGAGC-CGGa-------CGGUGcaGUGg -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 5119 | 0.72 | 0.19765 |
Target: 5'- aGGUGCUcgccaaGCUCGGCaugaccgcgCUGCCcgACGUCGgCg -3' miRNA: 3'- -CCACGA------CGAGCCG---------GACGG--UGCAGUgG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 5344 | 0.67 | 0.397227 |
Target: 5'- cGUGUUcGCguaCGGCCUGCgCGUGcUCGCCg -3' miRNA: 3'- cCACGA-CGa--GCCGGACG-GUGC-AGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 11205 | 0.71 | 0.230818 |
Target: 5'- uGGUGCaggcguaUGCgcaCGGCCUGCC-CGgcaagcUCGCCc -3' miRNA: 3'- -CCACG-------ACGa--GCCGGACGGuGC------AGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 12475 | 0.71 | 0.237499 |
Target: 5'- --cGCcguacGCUCGGCCUGCCGCaGgacguguucaUCGCCu -3' miRNA: 3'- ccaCGa----CGAGCCGGACGGUG-C----------AGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 13104 | 0.71 | 0.243712 |
Target: 5'- aGUGCUGCagGGCgUGCCGaagguCGaCACCu -3' miRNA: 3'- cCACGACGagCCGgACGGU-----GCaGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 13576 | 0.71 | 0.217933 |
Target: 5'- --aGCUGCUuaucaaaaaaucgcCGGCCguaaUGCCGCGUCucACCu -3' miRNA: 3'- ccaCGACGA--------------GCCGG----ACGGUGCAG--UGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 14647 | 0.67 | 0.379355 |
Target: 5'- --aGCcgGCgCGGUgCUGCC-CGUCGCCg -3' miRNA: 3'- ccaCGa-CGaGCCG-GACGGuGCAGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 16142 | 0.67 | 0.379355 |
Target: 5'- --aGCUGCa-GGCCgGCCACcGcCGCCc -3' miRNA: 3'- ccaCGACGagCCGGaCGGUG-CaGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 16387 | 0.72 | 0.187386 |
Target: 5'- aGUGUcgaagaUGCUCGGCguCUGCCGgGcCACCg -3' miRNA: 3'- cCACG------ACGAGCCG--GACGGUgCaGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 16495 | 0.7 | 0.283858 |
Target: 5'- cGG-GCUGgUCGGCgaUGUCgcaggccgaucGCGUCGCCg -3' miRNA: 3'- -CCaCGACgAGCCGg-ACGG-----------UGCAGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 17724 | 0.66 | 0.440323 |
Target: 5'- aGGUGCcguucuucaagacGCUCGGCacgGCCGCGcggcugauggCGCCc -3' miRNA: 3'- -CCACGa------------CGAGCCGga-CGGUGCa---------GUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 18170 | 0.66 | 0.483925 |
Target: 5'- --aGCUGCUCGGCaUGauuCGCGaggaaggcgaguUCGCCg -3' miRNA: 3'- ccaCGACGAGCCGgACg--GUGC------------AGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 18233 | 0.66 | 0.444196 |
Target: 5'- aGGUGaucGcCUCGGCCacGCCGgG-CACCg -3' miRNA: 3'- -CCACga-C-GAGCCGGa-CGGUgCaGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 18406 | 0.77 | 0.091349 |
Target: 5'- cGGUGCgUGCgcagaCGGCCgcgagGCCgACGUCAUCg -3' miRNA: 3'- -CCACG-ACGa----GCCGGa----CGG-UGCAGUGG- -5' |
|||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 22427 | 0.66 | 0.452977 |
Target: 5'- cGUGCUGCUguucugcaugUGGaUUGCCGucacgaacguguuCGUCACCg -3' miRNA: 3'- cCACGACGA----------GCCgGACGGU-------------GCAGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home