miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28018 3' -58.7 NC_005887.1 + 29984 1.14 0.000138
Target:  5'- cGGUGCUGCUCGGCCUGCCACGUCACCg -3'
miRNA:   3'- -CCACGACGAGCCGGACGGUGCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 28715 0.87 0.016444
Target:  5'- cGGUGCUGCUCGGCUgagugcggccGCCGCG-CGCCg -3'
miRNA:   3'- -CCACGACGAGCCGGa---------CGGUGCaGUGG- -5'
28018 3' -58.7 NC_005887.1 + 18406 0.77 0.091349
Target:  5'- cGGUGCgUGCgcagaCGGCCgcgagGCCgACGUCAUCg -3'
miRNA:   3'- -CCACG-ACGa----GCCGGa----CGG-UGCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 30522 0.76 0.101986
Target:  5'- cGUGCUGCUCGagaacaggccgccGCCUGCCuuaGCGUacgaACCg -3'
miRNA:   3'- cCACGACGAGC-------------CGGACGG---UGCAg---UGG- -5'
28018 3' -58.7 NC_005887.1 + 36872 0.75 0.111264
Target:  5'- cGGUGCUGCgccaUCGGCCUGCguCGUgGu- -3'
miRNA:   3'- -CCACGACG----AGCCGGACGguGCAgUgg -5'
28018 3' -58.7 NC_005887.1 + 38158 0.73 0.172871
Target:  5'- --cGCUGCagcacuUCGGUCgcgGUCAUGUCGCCg -3'
miRNA:   3'- ccaCGACG------AGCCGGa--CGGUGCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 16387 0.72 0.187386
Target:  5'- aGUGUcgaagaUGCUCGGCguCUGCCGgGcCACCg -3'
miRNA:   3'- cCACG------ACGAGCCG--GACGGUgCaGUGG- -5'
28018 3' -58.7 NC_005887.1 + 41608 0.72 0.192458
Target:  5'- aGGUGCgGCggccggcgCGGCCcgugaggaucUGCUGCGUCugCg -3'
miRNA:   3'- -CCACGaCGa-------GCCGG----------ACGGUGCAGugG- -5'
28018 3' -58.7 NC_005887.1 + 5119 0.72 0.19765
Target:  5'- aGGUGCUcgccaaGCUCGGCaugaccgcgCUGCCcgACGUCGgCg -3'
miRNA:   3'- -CCACGA------CGAGCCG---------GACGG--UGCAGUgG- -5'
28018 3' -58.7 NC_005887.1 + 237 0.72 0.208401
Target:  5'- aGGUGCUGUUUGaCCUGCgGCGccUCgACCu -3'
miRNA:   3'- -CCACGACGAGCcGGACGgUGC--AG-UGG- -5'
28018 3' -58.7 NC_005887.1 + 13576 0.71 0.217933
Target:  5'- --aGCUGCUuaucaaaaaaucgcCGGCCguaaUGCCGCGUCucACCu -3'
miRNA:   3'- ccaCGACGA--------------GCCGG----ACGGUGCAG--UGG- -5'
28018 3' -58.7 NC_005887.1 + 11205 0.71 0.230818
Target:  5'- uGGUGCaggcguaUGCgcaCGGCCUGCC-CGgcaagcUCGCCc -3'
miRNA:   3'- -CCACG-------ACGa--GCCGGACGGuGC------AGUGG- -5'
28018 3' -58.7 NC_005887.1 + 28926 0.71 0.231419
Target:  5'- cGGUGCgccGCUcgucgcagcagCGGCUUGCCgccgACGUcCGCCg -3'
miRNA:   3'- -CCACGa--CGA-----------GCCGGACGG----UGCA-GUGG- -5'
28018 3' -58.7 NC_005887.1 + 12475 0.71 0.237499
Target:  5'- --cGCcguacGCUCGGCCUGCCGCaGgacguguucaUCGCCu -3'
miRNA:   3'- ccaCGa----CGAGCCGGACGGUG-C----------AGUGG- -5'
28018 3' -58.7 NC_005887.1 + 41454 0.71 0.237499
Target:  5'- --cGCUGCUCGGCaC-GCCGCGcgaggaucugcUCAUCa -3'
miRNA:   3'- ccaCGACGAGCCG-GaCGGUGC-----------AGUGG- -5'
28018 3' -58.7 NC_005887.1 + 33044 0.71 0.237499
Target:  5'- uGUGCgucgGCguuUCGGugcccguaaCCUGCgGCGUCGCCg -3'
miRNA:   3'- cCACGa---CG---AGCC---------GGACGgUGCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 13104 0.71 0.243712
Target:  5'- aGUGCUGCagGGCgUGCCGaagguCGaCACCu -3'
miRNA:   3'- cCACGACGagCCGgACGGU-----GCaGUGG- -5'
28018 3' -58.7 NC_005887.1 + 25839 0.7 0.25006
Target:  5'- cGGcgGCgacGCgaUCGGCCUGCgACaUCGCCg -3'
miRNA:   3'- -CCa-CGa--CG--AGCCGGACGgUGcAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 4232 0.7 0.269923
Target:  5'- cGUGCUGCUCGcGCCgacgcucgGCCGCa-CGCa -3'
miRNA:   3'- cCACGACGAGC-CGGa-------CGGUGcaGUGg -5'
28018 3' -58.7 NC_005887.1 + 16495 0.7 0.283858
Target:  5'- cGG-GCUGgUCGGCgaUGUCgcaggccgaucGCGUCGCCg -3'
miRNA:   3'- -CCaCGACgAGCCGg-ACGG-----------UGCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.