Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 33944 | 0.7 | 0.283858 |
Target: 5'- uGGUcgUGCUCGGCCcacgcGCCuuGUCGCUu -3' miRNA: 3'- -CCAcgACGAGCCGGa----CGGugCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 22787 | 0.69 | 0.305818 |
Target: 5'- --cGCUGCUCGacguGCCUGCaACGUaaucgaCGCCg -3' miRNA: 3'- ccaCGACGAGC----CGGACGgUGCA------GUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 30159 | 0.69 | 0.313422 |
Target: 5'- cGGcGCUGUccuucgCGGUCUgcauguucugcaGCCACGUCACg -3' miRNA: 3'- -CCaCGACGa-----GCCGGA------------CGGUGCAGUGg -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 373 | 0.68 | 0.362029 |
Target: 5'- cGUGCUGCUgauaGGCgagcgcGCCGCGcacgCACCa -3' miRNA: 3'- cCACGACGAg---CCGga----CGGUGCa---GUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 37687 | 0.68 | 0.362029 |
Target: 5'- cGU-CUGCgcagCGGUCUG-CGCGUCGCUg -3' miRNA: 3'- cCAcGACGa---GCCGGACgGUGCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 32850 | 0.68 | 0.370622 |
Target: 5'- cGGUGUucggcagcaUGCcggggUCGGCCggGUCGuuCGUCGCCa -3' miRNA: 3'- -CCACG---------ACG-----AGCCGGa-CGGU--GCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 24651 | 0.67 | 0.378475 |
Target: 5'- -uUGUUGUagcCGGCCgucacgaacaucgUGCCgACGUCGCCa -3' miRNA: 3'- ccACGACGa--GCCGG-------------ACGG-UGCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 16142 | 0.67 | 0.379355 |
Target: 5'- --aGCUGCa-GGCCgGCCACcGcCGCCc -3' miRNA: 3'- ccaCGACGagCCGGaCGGUG-CaGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 14647 | 0.67 | 0.379355 |
Target: 5'- --aGCcgGCgCGGUgCUGCC-CGUCGCCg -3' miRNA: 3'- ccaCGa-CGaGCCG-GACGGuGCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 39649 | 0.67 | 0.382886 |
Target: 5'- --cGCgGCUCGGCCgcuUGCCgcccguacgcuucacGCG-CACCa -3' miRNA: 3'- ccaCGaCGAGCCGG---ACGG---------------UGCaGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 36833 | 0.67 | 0.388223 |
Target: 5'- cGUGcCUGCUgCGGCCggUGCUGCG--GCCg -3' miRNA: 3'- cCAC-GACGA-GCCGG--ACGGUGCagUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 5344 | 0.67 | 0.397227 |
Target: 5'- cGUGUUcGCguaCGGCCUGCgCGUGcUCGCCg -3' miRNA: 3'- cCACGA-CGa--GCCGGACG-GUGC-AGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 39985 | 0.67 | 0.406365 |
Target: 5'- cGUGUcuucGUcgUCGGCCUGCgagcgCugGUCGCCc -3' miRNA: 3'- cCACGa---CG--AGCCGGACG-----GugCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 23385 | 0.67 | 0.406365 |
Target: 5'- -uUGCUGCUC-GCgCUGCCGCuGgcaGCCu -3' miRNA: 3'- ccACGACGAGcCG-GACGGUG-Cag-UGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 30732 | 0.67 | 0.425029 |
Target: 5'- --cGCUGCgUGGCCUucGCgACuUCGCCg -3' miRNA: 3'- ccaCGACGaGCCGGA--CGgUGcAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 35724 | 0.66 | 0.434551 |
Target: 5'- cGUGCaGCUCGGUC-GCgGuCGUgGCCc -3' miRNA: 3'- cCACGaCGAGCCGGaCGgU-GCAgUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 26482 | 0.66 | 0.434551 |
Target: 5'- --aGCUGCUggUGcGCCUGCUGCG-CGCg -3' miRNA: 3'- ccaCGACGA--GC-CGGACGGUGCaGUGg -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 24254 | 0.66 | 0.434551 |
Target: 5'- cGGUGUcagGUauUCGGCguccccauacUUGCCggGCGUCGCCu -3' miRNA: 3'- -CCACGa--CG--AGCCG----------GACGG--UGCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 17724 | 0.66 | 0.440323 |
Target: 5'- aGGUGCcguucuucaagacGCUCGGCacgGCCGCGcggcugauggCGCCc -3' miRNA: 3'- -CCACGa------------CGAGCCGga-CGGUGCa---------GUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 18233 | 0.66 | 0.444196 |
Target: 5'- aGGUGaucGcCUCGGCCacGCCGgG-CACCg -3' miRNA: 3'- -CCACga-C-GAGCCGGa-CGGUgCaGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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