Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28018 | 3' | -58.7 | NC_005887.1 | + | 14647 | 0.67 | 0.379355 |
Target: 5'- --aGCcgGCgCGGUgCUGCC-CGUCGCCg -3' miRNA: 3'- ccaCGa-CGaGCCG-GACGGuGCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 16142 | 0.67 | 0.379355 |
Target: 5'- --aGCUGCa-GGCCgGCCACcGcCGCCc -3' miRNA: 3'- ccaCGACGagCCGGaCGGUG-CaGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 24651 | 0.67 | 0.378475 |
Target: 5'- -uUGUUGUagcCGGCCgucacgaacaucgUGCCgACGUCGCCa -3' miRNA: 3'- ccACGACGa--GCCGG-------------ACGG-UGCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 32850 | 0.68 | 0.370622 |
Target: 5'- cGGUGUucggcagcaUGCcggggUCGGCCggGUCGuuCGUCGCCa -3' miRNA: 3'- -CCACG---------ACG-----AGCCGGa-CGGU--GCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 37687 | 0.68 | 0.362029 |
Target: 5'- cGU-CUGCgcagCGGUCUG-CGCGUCGCUg -3' miRNA: 3'- cCAcGACGa---GCCGGACgGUGCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 373 | 0.68 | 0.362029 |
Target: 5'- cGUGCUGCUgauaGGCgagcgcGCCGCGcacgCACCa -3' miRNA: 3'- cCACGACGAg---CCGga----CGGUGCa---GUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 30159 | 0.69 | 0.313422 |
Target: 5'- cGGcGCUGUccuucgCGGUCUgcauguucugcaGCCACGUCACg -3' miRNA: 3'- -CCaCGACGa-----GCCGGA------------CGGUGCAGUGg -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 22787 | 0.69 | 0.305818 |
Target: 5'- --cGCUGCUCGacguGCCUGCaACGUaaucgaCGCCg -3' miRNA: 3'- ccaCGACGAGC----CGGACGgUGCA------GUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 33944 | 0.7 | 0.283858 |
Target: 5'- uGGUcgUGCUCGGCCcacgcGCCuuGUCGCUu -3' miRNA: 3'- -CCAcgACGAGCCGGa----CGGugCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 16495 | 0.7 | 0.283858 |
Target: 5'- cGG-GCUGgUCGGCgaUGUCgcaggccgaucGCGUCGCCg -3' miRNA: 3'- -CCaCGACgAGCCGg-ACGG-----------UGCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 4232 | 0.7 | 0.269923 |
Target: 5'- cGUGCUGCUCGcGCCgacgcucgGCCGCa-CGCa -3' miRNA: 3'- cCACGACGAGC-CGGa-------CGGUGcaGUGg -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 25839 | 0.7 | 0.25006 |
Target: 5'- cGGcgGCgacGCgaUCGGCCUGCgACaUCGCCg -3' miRNA: 3'- -CCa-CGa--CG--AGCCGGACGgUGcAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 13104 | 0.71 | 0.243712 |
Target: 5'- aGUGCUGCagGGCgUGCCGaagguCGaCACCu -3' miRNA: 3'- cCACGACGagCCGgACGGU-----GCaGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 41454 | 0.71 | 0.237499 |
Target: 5'- --cGCUGCUCGGCaC-GCCGCGcgaggaucugcUCAUCa -3' miRNA: 3'- ccaCGACGAGCCG-GaCGGUGC-----------AGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 33044 | 0.71 | 0.237499 |
Target: 5'- uGUGCgucgGCguuUCGGugcccguaaCCUGCgGCGUCGCCg -3' miRNA: 3'- cCACGa---CG---AGCC---------GGACGgUGCAGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 12475 | 0.71 | 0.237499 |
Target: 5'- --cGCcguacGCUCGGCCUGCCGCaGgacguguucaUCGCCu -3' miRNA: 3'- ccaCGa----CGAGCCGGACGGUG-C----------AGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 28926 | 0.71 | 0.231419 |
Target: 5'- cGGUGCgccGCUcgucgcagcagCGGCUUGCCgccgACGUcCGCCg -3' miRNA: 3'- -CCACGa--CGA-----------GCCGGACGG----UGCA-GUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 11205 | 0.71 | 0.230818 |
Target: 5'- uGGUGCaggcguaUGCgcaCGGCCUGCC-CGgcaagcUCGCCc -3' miRNA: 3'- -CCACG-------ACGa--GCCGGACGGuGC------AGUGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 13576 | 0.71 | 0.217933 |
Target: 5'- --aGCUGCUuaucaaaaaaucgcCGGCCguaaUGCCGCGUCucACCu -3' miRNA: 3'- ccaCGACGA--------------GCCGG----ACGGUGCAG--UGG- -5' |
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28018 | 3' | -58.7 | NC_005887.1 | + | 237 | 0.72 | 0.208401 |
Target: 5'- aGGUGCUGUUUGaCCUGCgGCGccUCgACCu -3' miRNA: 3'- -CCACGACGAGCcGGACGgUGC--AG-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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