Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28018 | 5' | -53.5 | NC_005887.1 | + | 41928 | 0.66 | 0.771379 |
Target: 5'- uGAGCGGCu--CGCA----GCUGAGCu -3' miRNA: 3'- gCUCGCUGcauGCGUcaagCGACUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 42074 | 0.66 | 0.771379 |
Target: 5'- gGAuCGACGaGCGCug-UCGCgugGGGCg -3' miRNA: 3'- gCUcGCUGCaUGCGucaAGCGa--CUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 5942 | 0.66 | 0.750418 |
Target: 5'- uCGGGCGAgGUGauCGauaAGcUCGCUGGcGCg -3' miRNA: 3'- -GCUCGCUgCAU--GCg--UCaAGCGACU-CG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 3380 | 0.66 | 0.739743 |
Target: 5'- aGGGaGugGUGCGCAcgcuGUUCGCcGcGCg -3' miRNA: 3'- gCUCgCugCAUGCGU----CAAGCGaCuCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 6867 | 0.66 | 0.739743 |
Target: 5'- --cGCGACGUcggccaacGCGCAGg-CGCUGAu- -3' miRNA: 3'- gcuCGCUGCA--------UGCGUCaaGCGACUcg -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 21278 | 0.66 | 0.739743 |
Target: 5'- -cGGCGGCGUAUGCGc--UGCUG-GCg -3' miRNA: 3'- gcUCGCUGCAUGCGUcaaGCGACuCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 24124 | 0.66 | 0.739743 |
Target: 5'- gCGcGUGuCGUGCGguGUgaagCGCcGGGCu -3' miRNA: 3'- -GCuCGCuGCAUGCguCAa---GCGaCUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 19192 | 0.67 | 0.696024 |
Target: 5'- gCGGGCGugGagacaggcgGCGCGGUUaCGaC-GAGCg -3' miRNA: 3'- -GCUCGCugCa--------UGCGUCAA-GC-GaCUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 6381 | 0.67 | 0.684902 |
Target: 5'- aCGGGCGA---ACGCGGggCGaaGGGCa -3' miRNA: 3'- -GCUCGCUgcaUGCGUCaaGCgaCUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 40976 | 0.67 | 0.680437 |
Target: 5'- aCGAGCG-CGacGCGCGGgacaggauguagCGCUcGAGCg -3' miRNA: 3'- -GCUCGCuGCa-UGCGUCaa----------GCGA-CUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 6081 | 0.67 | 0.670365 |
Target: 5'- uCGAGCGA-GUACGCGGacgaaggcacggccgCGCacGAGCu -3' miRNA: 3'- -GCUCGCUgCAUGCGUCaa-------------GCGa-CUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 11384 | 0.68 | 0.667001 |
Target: 5'- uGGGCGAaguuccucaCGUACGCGGgcgccgacaucacCGCcGAGCg -3' miRNA: 3'- gCUCGCU---------GCAUGCGUCaa-----------GCGaCUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 39094 | 0.68 | 0.66251 |
Target: 5'- -cGGCGACGaaguUGCGCAG--CGC-GAGCg -3' miRNA: 3'- gcUCGCUGC----AUGCGUCaaGCGaCUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 41940 | 0.68 | 0.651264 |
Target: 5'- gCGGGCGGCGcgGCGCGucUUCGC--GGCg -3' miRNA: 3'- -GCUCGCUGCa-UGCGUc-AAGCGacUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 10147 | 0.68 | 0.651264 |
Target: 5'- aCGAGCGGCaccucuGgcCGCAcUggcacuggcucaUCGCUGAGCg -3' miRNA: 3'- -GCUCGCUG------CauGCGUcA------------AGCGACUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 14220 | 0.68 | 0.651264 |
Target: 5'- aGGGCGGCGccGCGCuGUUCgGCgcGGCa -3' miRNA: 3'- gCUCGCUGCa-UGCGuCAAG-CGacUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 15547 | 0.68 | 0.650138 |
Target: 5'- aCGGGCGACGacucgGCGCGcgcgaccgcgcucGaUUCGCUGAucGCc -3' miRNA: 3'- -GCUCGCUGCa----UGCGU-------------C-AAGCGACU--CG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 5814 | 0.68 | 0.64 |
Target: 5'- -cGGCGGCGaucgagucgGCGCGGgUCGCgaaGGGCg -3' miRNA: 3'- gcUCGCUGCa--------UGCGUCaAGCGa--CUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 36921 | 0.68 | 0.64 |
Target: 5'- gCGGGCG-CGUggucGCGCcggUCGCUGcGGCg -3' miRNA: 3'- -GCUCGCuGCA----UGCGucaAGCGAC-UCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 4661 | 0.68 | 0.628727 |
Target: 5'- -cAGCGAC--GCGCAGacCGCUGcGCa -3' miRNA: 3'- gcUCGCUGcaUGCGUCaaGCGACuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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