miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28018 5' -53.5 NC_005887.1 + 41928 0.66 0.771379
Target:  5'- uGAGCGGCu--CGCA----GCUGAGCu -3'
miRNA:   3'- gCUCGCUGcauGCGUcaagCGACUCG- -5'
28018 5' -53.5 NC_005887.1 + 42074 0.66 0.771379
Target:  5'- gGAuCGACGaGCGCug-UCGCgugGGGCg -3'
miRNA:   3'- gCUcGCUGCaUGCGucaAGCGa--CUCG- -5'
28018 5' -53.5 NC_005887.1 + 5942 0.66 0.750418
Target:  5'- uCGGGCGAgGUGauCGauaAGcUCGCUGGcGCg -3'
miRNA:   3'- -GCUCGCUgCAU--GCg--UCaAGCGACU-CG- -5'
28018 5' -53.5 NC_005887.1 + 3380 0.66 0.739743
Target:  5'- aGGGaGugGUGCGCAcgcuGUUCGCcGcGCg -3'
miRNA:   3'- gCUCgCugCAUGCGU----CAAGCGaCuCG- -5'
28018 5' -53.5 NC_005887.1 + 6867 0.66 0.739743
Target:  5'- --cGCGACGUcggccaacGCGCAGg-CGCUGAu- -3'
miRNA:   3'- gcuCGCUGCA--------UGCGUCaaGCGACUcg -5'
28018 5' -53.5 NC_005887.1 + 21278 0.66 0.739743
Target:  5'- -cGGCGGCGUAUGCGc--UGCUG-GCg -3'
miRNA:   3'- gcUCGCUGCAUGCGUcaaGCGACuCG- -5'
28018 5' -53.5 NC_005887.1 + 24124 0.66 0.739743
Target:  5'- gCGcGUGuCGUGCGguGUgaagCGCcGGGCu -3'
miRNA:   3'- -GCuCGCuGCAUGCguCAa---GCGaCUCG- -5'
28018 5' -53.5 NC_005887.1 + 19192 0.67 0.696024
Target:  5'- gCGGGCGugGagacaggcgGCGCGGUUaCGaC-GAGCg -3'
miRNA:   3'- -GCUCGCugCa--------UGCGUCAA-GC-GaCUCG- -5'
28018 5' -53.5 NC_005887.1 + 6381 0.67 0.684902
Target:  5'- aCGGGCGA---ACGCGGggCGaaGGGCa -3'
miRNA:   3'- -GCUCGCUgcaUGCGUCaaGCgaCUCG- -5'
28018 5' -53.5 NC_005887.1 + 40976 0.67 0.680437
Target:  5'- aCGAGCG-CGacGCGCGGgacaggauguagCGCUcGAGCg -3'
miRNA:   3'- -GCUCGCuGCa-UGCGUCaa----------GCGA-CUCG- -5'
28018 5' -53.5 NC_005887.1 + 6081 0.67 0.670365
Target:  5'- uCGAGCGA-GUACGCGGacgaaggcacggccgCGCacGAGCu -3'
miRNA:   3'- -GCUCGCUgCAUGCGUCaa-------------GCGa-CUCG- -5'
28018 5' -53.5 NC_005887.1 + 11384 0.68 0.667001
Target:  5'- uGGGCGAaguuccucaCGUACGCGGgcgccgacaucacCGCcGAGCg -3'
miRNA:   3'- gCUCGCU---------GCAUGCGUCaa-----------GCGaCUCG- -5'
28018 5' -53.5 NC_005887.1 + 39094 0.68 0.66251
Target:  5'- -cGGCGACGaaguUGCGCAG--CGC-GAGCg -3'
miRNA:   3'- gcUCGCUGC----AUGCGUCaaGCGaCUCG- -5'
28018 5' -53.5 NC_005887.1 + 41940 0.68 0.651264
Target:  5'- gCGGGCGGCGcgGCGCGucUUCGC--GGCg -3'
miRNA:   3'- -GCUCGCUGCa-UGCGUc-AAGCGacUCG- -5'
28018 5' -53.5 NC_005887.1 + 10147 0.68 0.651264
Target:  5'- aCGAGCGGCaccucuGgcCGCAcUggcacuggcucaUCGCUGAGCg -3'
miRNA:   3'- -GCUCGCUG------CauGCGUcA------------AGCGACUCG- -5'
28018 5' -53.5 NC_005887.1 + 14220 0.68 0.651264
Target:  5'- aGGGCGGCGccGCGCuGUUCgGCgcGGCa -3'
miRNA:   3'- gCUCGCUGCa-UGCGuCAAG-CGacUCG- -5'
28018 5' -53.5 NC_005887.1 + 15547 0.68 0.650138
Target:  5'- aCGGGCGACGacucgGCGCGcgcgaccgcgcucGaUUCGCUGAucGCc -3'
miRNA:   3'- -GCUCGCUGCa----UGCGU-------------C-AAGCGACU--CG- -5'
28018 5' -53.5 NC_005887.1 + 5814 0.68 0.64
Target:  5'- -cGGCGGCGaucgagucgGCGCGGgUCGCgaaGGGCg -3'
miRNA:   3'- gcUCGCUGCa--------UGCGUCaAGCGa--CUCG- -5'
28018 5' -53.5 NC_005887.1 + 36921 0.68 0.64
Target:  5'- gCGGGCG-CGUggucGCGCcggUCGCUGcGGCg -3'
miRNA:   3'- -GCUCGCuGCA----UGCGucaAGCGAC-UCG- -5'
28018 5' -53.5 NC_005887.1 + 4661 0.68 0.628727
Target:  5'- -cAGCGAC--GCGCAGacCGCUGcGCa -3'
miRNA:   3'- gcUCGCUGcaUGCGUCaaGCGACuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.