miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28018 5' -53.5 NC_005887.1 + 42074 0.66 0.771379
Target:  5'- gGAuCGACGaGCGCug-UCGCgugGGGCg -3'
miRNA:   3'- gCUcGCUGCaUGCGucaAGCGa--CUCG- -5'
28018 5' -53.5 NC_005887.1 + 41940 0.68 0.651264
Target:  5'- gCGGGCGGCGcgGCGCGucUUCGC--GGCg -3'
miRNA:   3'- -GCUCGCUGCa-UGCGUc-AAGCGacUCG- -5'
28018 5' -53.5 NC_005887.1 + 41928 0.66 0.771379
Target:  5'- uGAGCGGCu--CGCA----GCUGAGCu -3'
miRNA:   3'- gCUCGCUGcauGCGUcaagCGACUCG- -5'
28018 5' -53.5 NC_005887.1 + 41104 0.69 0.572616
Target:  5'- --uGCGACGUuuuCGCG---UGCUGAGCg -3'
miRNA:   3'- gcuCGCUGCAu--GCGUcaaGCGACUCG- -5'
28018 5' -53.5 NC_005887.1 + 40976 0.67 0.680437
Target:  5'- aCGAGCG-CGacGCGCGGgacaggauguagCGCUcGAGCg -3'
miRNA:   3'- -GCUCGCuGCa-UGCGUCaa----------GCGA-CUCG- -5'
28018 5' -53.5 NC_005887.1 + 40114 0.68 0.6276
Target:  5'- aCGAGcCGcaggacgccuacaGCGUGCGguGcgCGCUGcGCg -3'
miRNA:   3'- -GCUC-GC-------------UGCAUGCguCaaGCGACuCG- -5'
28018 5' -53.5 NC_005887.1 + 39094 0.68 0.66251
Target:  5'- -cGGCGACGaaguUGCGCAG--CGC-GAGCg -3'
miRNA:   3'- gcUCGCUGC----AUGCGUCaaGCGaCUCG- -5'
28018 5' -53.5 NC_005887.1 + 37443 0.69 0.583772
Target:  5'- gGAGCGcgGCGcuugccUGCGCGGUUUGCaGuGCg -3'
miRNA:   3'- gCUCGC--UGC------AUGCGUCAAGCGaCuCG- -5'
28018 5' -53.5 NC_005887.1 + 36921 0.68 0.64
Target:  5'- gCGGGCG-CGUggucGCGCcggUCGCUGcGGCg -3'
miRNA:   3'- -GCUCGCuGCA----UGCGucaAGCGAC-UCG- -5'
28018 5' -53.5 NC_005887.1 + 35441 0.69 0.550464
Target:  5'- uCGAGCGACGcguagaugACGCcgaggcGUUCGUUgucGAGCa -3'
miRNA:   3'- -GCUCGCUGCa-------UGCGu-----CAAGCGA---CUCG- -5'
28018 5' -53.5 NC_005887.1 + 34960 0.68 0.606203
Target:  5'- -cGGCGGgCGUGCGCAGgUUGUUGAugaagGCg -3'
miRNA:   3'- gcUCGCU-GCAUGCGUCaAGCGACU-----CG- -5'
28018 5' -53.5 NC_005887.1 + 33901 0.71 0.484814
Target:  5'- cCGGGCGcucgaucGCGUugACGCGGaUCGCUcGGCg -3'
miRNA:   3'- -GCUCGC-------UGCA--UGCGUCaAGCGAcUCG- -5'
28018 5' -53.5 NC_005887.1 + 33111 0.69 0.550464
Target:  5'- gCGAucGcCGACGcgGCGCAGUUCGCUaGGa -3'
miRNA:   3'- -GCU--C-GCUGCa-UGCGUCAAGCGAcUCg -5'
28018 5' -53.5 NC_005887.1 + 30335 0.72 0.400193
Target:  5'- gCGAGCGGCGUGCGUg---CGCcggaugucugcaacgUGGGCg -3'
miRNA:   3'- -GCUCGCUGCAUGCGucaaGCG---------------ACUCG- -5'
28018 5' -53.5 NC_005887.1 + 30281 0.71 0.485862
Target:  5'- cCGAGCGACGUGC-CGaccUGCUGcAGCg -3'
miRNA:   3'- -GCUCGCUGCAUGcGUcaaGCGAC-UCG- -5'
28018 5' -53.5 NC_005887.1 + 30020 1.12 0.000739
Target:  5'- gCGAGCGACGUACGCAGUUCGCUGAGCu -3'
miRNA:   3'- -GCUCGCUGCAUGCGUCAAGCGACUCG- -5'
28018 5' -53.5 NC_005887.1 + 28232 0.75 0.265997
Target:  5'- uGAGCaGCGcGCGCAGcUUCGC-GAGCg -3'
miRNA:   3'- gCUCGcUGCaUGCGUC-AAGCGaCUCG- -5'
28018 5' -53.5 NC_005887.1 + 27424 0.69 0.56151
Target:  5'- gCGcGCGGCGUGCGUcGaUCGC-GAGUg -3'
miRNA:   3'- -GCuCGCUGCAUGCGuCaAGCGaCUCG- -5'
28018 5' -53.5 NC_005887.1 + 26415 0.71 0.434905
Target:  5'- uCGAGCuGGCGgccGCGCGGgaacgcgCGCUGcAGCc -3'
miRNA:   3'- -GCUCG-CUGCa--UGCGUCaa-----GCGAC-UCG- -5'
28018 5' -53.5 NC_005887.1 + 24419 0.69 0.594971
Target:  5'- aCGAGCucguuCGUGCGCAcgcaggUCGC-GAGCa -3'
miRNA:   3'- -GCUCGcu---GCAUGCGUca----AGCGaCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.