Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28018 | 5' | -53.5 | NC_005887.1 | + | 6381 | 0.67 | 0.684902 |
Target: 5'- aCGGGCGA---ACGCGGggCGaaGGGCa -3' miRNA: 3'- -GCUCGCUgcaUGCGUCaaGCgaCUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 23957 | 0.73 | 0.369079 |
Target: 5'- --cGCGGCGUAgGCcaucgGGUUCGC-GAGCg -3' miRNA: 3'- gcuCGCUGCAUgCG-----UCAAGCGaCUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 15308 | 0.74 | 0.294252 |
Target: 5'- uCGGGCGgcaGCGUGCGCGGUcgcgcgcUCGCcGAGg -3' miRNA: 3'- -GCUCGC---UGCAUGCGUCA-------AGCGaCUCg -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 30020 | 1.12 | 0.000739 |
Target: 5'- gCGAGCGACGUACGCAGUUCGCUGAGCu -3' miRNA: 3'- -GCUCGCUGCAUGCGUCAAGCGACUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 39094 | 0.68 | 0.66251 |
Target: 5'- -cGGCGACGaaguUGCGCAG--CGC-GAGCg -3' miRNA: 3'- gcUCGCUGC----AUGCGUCaaGCGaCUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 10147 | 0.68 | 0.651264 |
Target: 5'- aCGAGCGGCaccucuGgcCGCAcUggcacuggcucaUCGCUGAGCg -3' miRNA: 3'- -GCUCGCUG------CauGCGUcA------------AGCGACUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 36921 | 0.68 | 0.64 |
Target: 5'- gCGGGCG-CGUggucGCGCcggUCGCUGcGGCg -3' miRNA: 3'- -GCUCGCuGCA----UGCGucaAGCGAC-UCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 18806 | 0.68 | 0.606203 |
Target: 5'- gCGGGCGGCGUcaGCGUA---CGCUGccAGCu -3' miRNA: 3'- -GCUCGCUGCA--UGCGUcaaGCGAC--UCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 33111 | 0.69 | 0.550464 |
Target: 5'- gCGAucGcCGACGcgGCGCAGUUCGCUaGGa -3' miRNA: 3'- -GCU--C-GCUGCa-UGCGUCAAGCGAcUCg -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 30335 | 0.72 | 0.400193 |
Target: 5'- gCGAGCGGCGUGCGUg---CGCcggaugucugcaacgUGGGCg -3' miRNA: 3'- -GCUCGCUGCAUGCGucaaGCG---------------ACUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 5237 | 0.71 | 0.485862 |
Target: 5'- cCGGGCGACGgcCGCGcGaUCGCcGAGg -3' miRNA: 3'- -GCUCGCUGCauGCGU-CaAGCGaCUCg -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 27424 | 0.69 | 0.56151 |
Target: 5'- gCGcGCGGCGUGCGUcGaUCGC-GAGUg -3' miRNA: 3'- -GCuCGCUGCAUGCGuCaAGCGaCUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 40976 | 0.67 | 0.680437 |
Target: 5'- aCGAGCG-CGacGCGCGGgacaggauguagCGCUcGAGCg -3' miRNA: 3'- -GCUCGCuGCa-UGCGUCaa----------GCGA-CUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 33901 | 0.71 | 0.484814 |
Target: 5'- cCGGGCGcucgaucGCGUugACGCGGaUCGCUcGGCg -3' miRNA: 3'- -GCUCGC-------UGCA--UGCGUCaAGCGAcUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 6081 | 0.67 | 0.670365 |
Target: 5'- uCGAGCGA-GUACGCGGacgaaggcacggccgCGCacGAGCu -3' miRNA: 3'- -GCUCGCUgCAUGCGUCaa-------------GCGa-CUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 41104 | 0.69 | 0.572616 |
Target: 5'- --uGCGACGUuuuCGCG---UGCUGAGCg -3' miRNA: 3'- gcuCGCUGCAu--GCGUcaaGCGACUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 6475 | 0.71 | 0.465122 |
Target: 5'- aCGGGCGcgGCGU-CGCGGUgucUGCcGAGCg -3' miRNA: 3'- -GCUCGC--UGCAuGCGUCAa--GCGaCUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 6948 | 0.73 | 0.360249 |
Target: 5'- uGGGCGAaggcCGUGCGCGGgcgcaUCGagcaUGAGCu -3' miRNA: 3'- gCUCGCU----GCAUGCGUCa----AGCg---ACUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 11384 | 0.68 | 0.667001 |
Target: 5'- uGGGCGAaguuccucaCGUACGCGGgcgccgacaucacCGCcGAGCg -3' miRNA: 3'- gCUCGCU---------GCAUGCGUCaa-----------GCGaCUCG- -5' |
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28018 | 5' | -53.5 | NC_005887.1 | + | 41940 | 0.68 | 0.651264 |
Target: 5'- gCGGGCGGCGcgGCGCGucUUCGC--GGCg -3' miRNA: 3'- -GCUCGCUGCa-UGCGUc-AAGCGacUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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