Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28019 | 3' | -53.8 | NC_005887.1 | + | 26117 | 0.67 | 0.624033 |
Target: 5'- uGCGCUcGCCGGcCGGCGuaucgaucGUGAccUGCGUg -3' miRNA: 3'- -CGCGA-CGGUC-GUCGC--------UACUucAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 26209 | 0.68 | 0.556231 |
Target: 5'- gGCGC-GCCGGUgguuGGCGggGuGGUuGCGCg -3' miRNA: 3'- -CGCGaCGGUCG----UCGCuaCuUCA-UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 26872 | 0.75 | 0.253641 |
Target: 5'- cGCGCgGCCAGCucgaacGCGucuuGGUGCGCg -3' miRNA: 3'- -CGCGaCGGUCGu-----CGCuacuUCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 27974 | 0.67 | 0.65817 |
Target: 5'- cGCGC-GCCgAGCGGCGAcucGAacaGGUGCccgGCa -3' miRNA: 3'- -CGCGaCGG-UCGUCGCUa--CU---UCAUG---CG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 28336 | 0.76 | 0.221669 |
Target: 5'- gGCGC-GCCGGCGGuUGcgGAGGcGCGCg -3' miRNA: 3'- -CGCGaCGGUCGUC-GCuaCUUCaUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 28502 | 0.69 | 0.512195 |
Target: 5'- cGCGC-GCCGGCGGgaaGAUGAcg-AUGCg -3' miRNA: 3'- -CGCGaCGGUCGUCg--CUACUucaUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 28749 | 1.15 | 0.000343 |
Target: 5'- cGCGCUGCCAGCAGCGAUGAAGUACGCg -3' miRNA: 3'- -CGCGACGGUCGUCGCUACUUCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 29200 | 0.71 | 0.438983 |
Target: 5'- uGCGCgGCCuuaAGCugcGCGAUGGugaaguggauGGUAUGCa -3' miRNA: 3'- -CGCGaCGG---UCGu--CGCUACU----------UCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 29791 | 0.66 | 0.692073 |
Target: 5'- uGCGCaUGCCGGCGGCc--GucG-ACGCc -3' miRNA: 3'- -CGCG-ACGGUCGUCGcuaCuuCaUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 29792 | 0.7 | 0.449085 |
Target: 5'- cGCGCagcucggGCCAGUAGCug-GAAGUcugcggguguGCGCg -3' miRNA: 3'- -CGCGa------CGGUCGUCGcuaCUUCA----------UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 30009 | 0.69 | 0.534052 |
Target: 5'- cCGCcugGCCGGCgAGCGAc---GUACGCa -3' miRNA: 3'- cGCGa--CGGUCG-UCGCUacuuCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 30254 | 0.69 | 0.545105 |
Target: 5'- uGCGCgGCCAGCAcGuCGGUGAccugaccgAGcgACGUg -3' miRNA: 3'- -CGCGaCGGUCGU-C-GCUACU--------UCa-UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 30331 | 0.68 | 0.601294 |
Target: 5'- -gGUUGCgAGCGGCG-UGc-GUGCGCc -3' miRNA: 3'- cgCGACGgUCGUCGCuACuuCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 30568 | 0.66 | 0.725419 |
Target: 5'- aCGCcGCCgAGCAGCGA---GG-ACGCc -3' miRNA: 3'- cGCGaCGG-UCGUCGCUacuUCaUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 30919 | 0.72 | 0.354333 |
Target: 5'- aGCGCggcaucgccuugUGCCAGCgcgcucGGCGGUGAuGUcgGCGCc -3' miRNA: 3'- -CGCG------------ACGGUCG------UCGCUACUuCA--UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 31043 | 0.68 | 0.578668 |
Target: 5'- gGCGCUcgcugccgaGCCGGCcgcuGCGAgcaGAGGUagaaACGCc -3' miRNA: 3'- -CGCGA---------CGGUCGu---CGCUa--CUUCA----UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 32430 | 0.77 | 0.177688 |
Target: 5'- gGCGaugugGCCGGCGGCGAUcAGGUuGCGCa -3' miRNA: 3'- -CGCga---CGGUCGUCGCUAcUUCA-UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 32527 | 0.69 | 0.52308 |
Target: 5'- cGCGCUGaCCGGCuGCGAcgc-GUuCGCg -3' miRNA: 3'- -CGCGAC-GGUCGuCGCUacuuCAuGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 32766 | 0.68 | 0.601294 |
Target: 5'- cGCGC-GCCAuGCAGCcggcucGUGCGCa -3' miRNA: 3'- -CGCGaCGGU-CGUCGcuacuuCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 33382 | 0.72 | 0.372122 |
Target: 5'- cGCGCcgGCgCGGCAG-GAUGAggcucaucgcGGUGCGUa -3' miRNA: 3'- -CGCGa-CG-GUCGUCgCUACU----------UCAUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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