miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 3' -53.8 NC_005887.1 + 13610 0.73 0.30464
Target:  5'- uCGCUGCUGGCAGCGcgGc---GCGCg -3'
miRNA:   3'- cGCGACGGUCGUCGCuaCuucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 13945 0.67 0.65817
Target:  5'- cGCGC-GCuCGGCuGCGAc---GUGCGCg -3'
miRNA:   3'- -CGCGaCG-GUCGuCGCUacuuCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 14132 0.69 0.527459
Target:  5'- cGCGCUGCuCAaaaccgccgagacgcGCGGCGcUGAugcgGCGCa -3'
miRNA:   3'- -CGCGACG-GU---------------CGUCGCuACUuca-UGCG- -5'
28019 3' -53.8 NC_005887.1 + 14531 0.66 0.725419
Target:  5'- gGCGCggccGUCGGCGGCGcgucgaucggcAUGucGcGCGCg -3'
miRNA:   3'- -CGCGa---CGGUCGUCGC-----------UACuuCaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 15102 0.75 0.246957
Target:  5'- aCGCggGCCGGCGcGCGAUGcAGuUGCGCc -3'
miRNA:   3'- cGCGa-CGGUCGU-CGCUACuUC-AUGCG- -5'
28019 3' -53.8 NC_005887.1 + 15696 0.69 0.532951
Target:  5'- cGCGCgGCCGGaugauuccgccgcCGGCG-UGAAGgagcugACGCg -3'
miRNA:   3'- -CGCGaCGGUC-------------GUCGCuACUUCa-----UGCG- -5'
28019 3' -53.8 NC_005887.1 + 15836 0.7 0.480135
Target:  5'- aGCGCuUGCgCGGC-GCGAUcGAGGgaaACGCc -3'
miRNA:   3'- -CGCG-ACG-GUCGuCGCUA-CUUCa--UGCG- -5'
28019 3' -53.8 NC_005887.1 + 15879 0.67 0.624033
Target:  5'- gGCGCa-CCAGCAGCuc---GGUGCGCu -3'
miRNA:   3'- -CGCGacGGUCGUCGcuacuUCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 15969 0.71 0.438983
Target:  5'- cCGCUGUC-GCAGUucgucgagGAUGucGUGCGCg -3'
miRNA:   3'- cGCGACGGuCGUCG--------CUACuuCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 16698 0.7 0.459314
Target:  5'- cGCGCUG-CGGCuGGCGGUGAAGcucaaccUGCa -3'
miRNA:   3'- -CGCGACgGUCG-UCGCUACUUCau-----GCG- -5'
28019 3' -53.8 NC_005887.1 + 18379 0.68 0.601294
Target:  5'- cGCGCU-CgAGCAGUGGgccGAGGUcgucggugcguGCGCa -3'
miRNA:   3'- -CGCGAcGgUCGUCGCUa--CUUCA-----------UGCG- -5'
28019 3' -53.8 NC_005887.1 + 18787 0.74 0.289308
Target:  5'- cGCaCUGCCGGcCGGCGAUGcGGgcgGCGUc -3'
miRNA:   3'- -CGcGACGGUC-GUCGCUACuUCa--UGCG- -5'
28019 3' -53.8 NC_005887.1 + 18960 0.66 0.725419
Target:  5'- uGCgGCUGCCAGCGGCa-------GCGCg -3'
miRNA:   3'- -CG-CGACGGUCGUCGcuacuucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 20197 0.66 0.703267
Target:  5'- uGCGC-GUCAGCccuucGcCGAUGAAGccgaGCGCg -3'
miRNA:   3'- -CGCGaCGGUCGu----C-GCUACUUCa---UGCG- -5'
28019 3' -53.8 NC_005887.1 + 20769 0.68 0.589962
Target:  5'- cGUGCcgacgaUGCCGGCAGUacugGAUGgcGUaauuGCGCc -3'
miRNA:   3'- -CGCG------ACGGUCGUCG----CUACuuCA----UGCG- -5'
28019 3' -53.8 NC_005887.1 + 20853 0.75 0.240419
Target:  5'- uGCGCcgauUGCCGGCGGCGAUGcGAGaUAgGUc -3'
miRNA:   3'- -CGCG----ACGGUCGUCGCUAC-UUC-AUgCG- -5'
28019 3' -53.8 NC_005887.1 + 22114 0.71 0.409479
Target:  5'- cUGCUGCCGGguGCGAuuggcucgcUGAuc-GCGCu -3'
miRNA:   3'- cGCGACGGUCguCGCU---------ACUucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 23393 0.69 0.52308
Target:  5'- cGCGCUGCCgcuGGCAGCc-UGcAGcaGCGCg -3'
miRNA:   3'- -CGCGACGG---UCGUCGcuACuUCa-UGCG- -5'
28019 3' -53.8 NC_005887.1 + 23454 0.68 0.609244
Target:  5'- cGgGCUGCCGGUgccgGGCGAccagaaauaaucguUGuGGUACuGCg -3'
miRNA:   3'- -CgCGACGGUCG----UCGCU--------------ACuUCAUG-CG- -5'
28019 3' -53.8 NC_005887.1 + 25019 0.73 0.320588
Target:  5'- uGCGC-GUCAGCAuCGcgGAAGUGCaGCa -3'
miRNA:   3'- -CGCGaCGGUCGUcGCuaCUUCAUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.