miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 3' -53.8 NC_005887.1 + 32430 0.77 0.177688
Target:  5'- gGCGaugugGCCGGCGGCGAUcAGGUuGCGCa -3'
miRNA:   3'- -CGCga---CGGUCGUCGCUAcUUCA-UGCG- -5'
28019 3' -53.8 NC_005887.1 + 31043 0.68 0.578668
Target:  5'- gGCGCUcgcugccgaGCCGGCcgcuGCGAgcaGAGGUagaaACGCc -3'
miRNA:   3'- -CGCGA---------CGGUCGu---CGCUa--CUUCA----UGCG- -5'
28019 3' -53.8 NC_005887.1 + 30919 0.72 0.354333
Target:  5'- aGCGCggcaucgccuugUGCCAGCgcgcucGGCGGUGAuGUcgGCGCc -3'
miRNA:   3'- -CGCG------------ACGGUCG------UCGCUACUuCA--UGCG- -5'
28019 3' -53.8 NC_005887.1 + 30568 0.66 0.725419
Target:  5'- aCGCcGCCgAGCAGCGA---GG-ACGCc -3'
miRNA:   3'- cGCGaCGG-UCGUCGCUacuUCaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 30331 0.68 0.601294
Target:  5'- -gGUUGCgAGCGGCG-UGc-GUGCGCc -3'
miRNA:   3'- cgCGACGgUCGUCGCuACuuCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 30254 0.69 0.545105
Target:  5'- uGCGCgGCCAGCAcGuCGGUGAccugaccgAGcgACGUg -3'
miRNA:   3'- -CGCGaCGGUCGU-C-GCUACU--------UCa-UGCG- -5'
28019 3' -53.8 NC_005887.1 + 30009 0.69 0.534052
Target:  5'- cCGCcugGCCGGCgAGCGAc---GUACGCa -3'
miRNA:   3'- cGCGa--CGGUCG-UCGCUacuuCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 29792 0.7 0.449085
Target:  5'- cGCGCagcucggGCCAGUAGCug-GAAGUcugcggguguGCGCg -3'
miRNA:   3'- -CGCGa------CGGUCGUCGcuaCUUCA----------UGCG- -5'
28019 3' -53.8 NC_005887.1 + 29791 0.66 0.692073
Target:  5'- uGCGCaUGCCGGCGGCc--GucG-ACGCc -3'
miRNA:   3'- -CGCG-ACGGUCGUCGcuaCuuCaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 29200 0.71 0.438983
Target:  5'- uGCGCgGCCuuaAGCugcGCGAUGGugaaguggauGGUAUGCa -3'
miRNA:   3'- -CGCGaCGG---UCGu--CGCUACU----------UCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 28749 1.15 0.000343
Target:  5'- cGCGCUGCCAGCAGCGAUGAAGUACGCg -3'
miRNA:   3'- -CGCGACGGUCGUCGCUACUUCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 28502 0.69 0.512195
Target:  5'- cGCGC-GCCGGCGGgaaGAUGAcg-AUGCg -3'
miRNA:   3'- -CGCGaCGGUCGUCg--CUACUucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 28336 0.76 0.221669
Target:  5'- gGCGC-GCCGGCGGuUGcgGAGGcGCGCg -3'
miRNA:   3'- -CGCGaCGGUCGUC-GCuaCUUCaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 27974 0.67 0.65817
Target:  5'- cGCGC-GCCgAGCGGCGAcucGAacaGGUGCccgGCa -3'
miRNA:   3'- -CGCGaCGG-UCGUCGCUa--CU---UCAUG---CG- -5'
28019 3' -53.8 NC_005887.1 + 26872 0.75 0.253641
Target:  5'- cGCGCgGCCAGCucgaacGCGucuuGGUGCGCg -3'
miRNA:   3'- -CGCGaCGGUCGu-----CGCuacuUCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 26209 0.68 0.556231
Target:  5'- gGCGC-GCCGGUgguuGGCGggGuGGUuGCGCg -3'
miRNA:   3'- -CGCGaCGGUCG----UCGCuaCuUCA-UGCG- -5'
28019 3' -53.8 NC_005887.1 + 26117 0.67 0.624033
Target:  5'- uGCGCUcGCCGGcCGGCGuaucgaucGUGAccUGCGUg -3'
miRNA:   3'- -CGCGA-CGGUC-GUCGC--------UACUucAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 25019 0.73 0.320588
Target:  5'- uGCGC-GUCAGCAuCGcgGAAGUGCaGCa -3'
miRNA:   3'- -CGCGaCGGUCGUcGCuaCUUCAUG-CG- -5'
28019 3' -53.8 NC_005887.1 + 23454 0.68 0.609244
Target:  5'- cGgGCUGCCGGUgccgGGCGAccagaaauaaucguUGuGGUACuGCg -3'
miRNA:   3'- -CgCGACGGUCG----UCGCU--------------ACuUCAUG-CG- -5'
28019 3' -53.8 NC_005887.1 + 23393 0.69 0.52308
Target:  5'- cGCGCUGCCgcuGGCAGCc-UGcAGcaGCGCg -3'
miRNA:   3'- -CGCGACGG---UCGUCGcuACuUCa-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.