miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 3' -53.8 NC_005887.1 + 41945 0.66 0.679689
Target:  5'- -aGCUGcCCGGCGugcucgcGUGGUGc-GUGCGCg -3'
miRNA:   3'- cgCGAC-GGUCGU-------CGCUACuuCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 41588 0.68 0.567422
Target:  5'- cUGUcgGCCAGCGGCGGcccAGGUGCGg -3'
miRNA:   3'- cGCGa-CGGUCGUCGCUac-UUCAUGCg -5'
28019 3' -53.8 NC_005887.1 + 40951 0.71 0.438983
Target:  5'- cCGCUGCCgAGCGGgcccaUGAUGAAcGaGCGCg -3'
miRNA:   3'- cGCGACGG-UCGUC-----GCUACUU-CaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 40776 0.71 0.419177
Target:  5'- cGCGCcGCCgAGcCGGCGGUcGAGGUucguggcggcgACGCg -3'
miRNA:   3'- -CGCGaCGG-UC-GUCGCUA-CUUCA-----------UGCG- -5'
28019 3' -53.8 NC_005887.1 + 40528 0.67 0.635419
Target:  5'- aCGCggcGCgCGGCAGCGAcGAcGGUcugGCGCu -3'
miRNA:   3'- cGCGa--CG-GUCGUCGCUaCU-UCA---UGCG- -5'
28019 3' -53.8 NC_005887.1 + 38947 0.7 0.448069
Target:  5'- cGCcCUGCCAGCGguagcgcGCGgcGAAcagcGUGCGCa -3'
miRNA:   3'- -CGcGACGGUCGU-------CGCuaCUU----CAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 38744 0.68 0.567422
Target:  5'- aGCGCUGCgCGGCcuGGCGcaacGUGAGcucccacugcacGUGCGUc -3'
miRNA:   3'- -CGCGACG-GUCG--UCGC----UACUU------------CAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 37701 0.68 0.589962
Target:  5'- aGCGaC-GCCGGgGGCGAUcAGGUucaGCGCg -3'
miRNA:   3'- -CGC-GaCGGUCgUCGCUAcUUCA---UGCG- -5'
28019 3' -53.8 NC_005887.1 + 37580 0.7 0.458285
Target:  5'- cGCGgaGCC-GCGGCGGaauucgGAucucgucAGUGCGCg -3'
miRNA:   3'- -CGCgaCGGuCGUCGCUa-----CU-------UCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 37501 0.66 0.680818
Target:  5'- uGCGCUGCaCGGgGGaCG-UGAucacggucgacuGGUugGCg -3'
miRNA:   3'- -CGCGACG-GUCgUC-GCuACU------------UCAugCG- -5'
28019 3' -53.8 NC_005887.1 + 37450 0.71 0.409479
Target:  5'- gGCGCUuGCCuGC-GCGGuuUGcAGUGCGCc -3'
miRNA:   3'- -CGCGA-CGGuCGuCGCU--ACuUCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 37401 0.67 0.65817
Target:  5'- gGCGCUGCgCGGUcGCGAcUGccugcacgccAGGUGCGg -3'
miRNA:   3'- -CGCGACG-GUCGuCGCU-AC----------UUCAUGCg -5'
28019 3' -53.8 NC_005887.1 + 35910 0.66 0.677431
Target:  5'- cGCGCacuucgaucucgGCCGGCcguccggccacacGGCGAUGAuc-ACGCa -3'
miRNA:   3'- -CGCGa-----------CGGUCG-------------UCGCUACUucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 35751 0.69 0.530752
Target:  5'- gGUGCcGCCAGCGuCGAUGAcGUuguccuuguucucgGCGCu -3'
miRNA:   3'- -CGCGaCGGUCGUcGCUACUuCA--------------UGCG- -5'
28019 3' -53.8 NC_005887.1 + 35035 0.7 0.469665
Target:  5'- cGUGUUGUCGGCGGCGAcGGAcgGCGa -3'
miRNA:   3'- -CGCGACGGUCGUCGCUaCUUcaUGCg -5'
28019 3' -53.8 NC_005887.1 + 34918 0.66 0.692073
Target:  5'- cGCGCacGCCAGCccaaacgaGGCGgcGGcgGGUGCGa -3'
miRNA:   3'- -CGCGa-CGGUCG--------UCGCuaCU--UCAUGCg -5'
28019 3' -53.8 NC_005887.1 + 34256 0.66 0.714386
Target:  5'- aGCGCgGCgAGCuGCGcgcgcgcuuucGUGAAcgaccagacGUGCGCa -3'
miRNA:   3'- -CGCGaCGgUCGuCGC-----------UACUU---------CAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 33382 0.72 0.372122
Target:  5'- cGCGCcgGCgCGGCAG-GAUGAggcucaucgcGGUGCGUa -3'
miRNA:   3'- -CGCGa-CG-GUCGUCgCUACU----------UCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 32766 0.68 0.601294
Target:  5'- cGCGC-GCCAuGCAGCcggcucGUGCGCa -3'
miRNA:   3'- -CGCGaCGGU-CGUCGcuacuuCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 32527 0.69 0.52308
Target:  5'- cGCGCUGaCCGGCuGCGAcgc-GUuCGCg -3'
miRNA:   3'- -CGCGAC-GGUCGuCGCUacuuCAuGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.