miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 3' -53.8 NC_005887.1 + 40951 0.71 0.438983
Target:  5'- cCGCUGCCgAGCGGgcccaUGAUGAAcGaGCGCg -3'
miRNA:   3'- cGCGACGG-UCGUC-----GCUACUU-CaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 15969 0.71 0.438983
Target:  5'- cCGCUGUC-GCAGUucgucgagGAUGucGUGCGCg -3'
miRNA:   3'- cGCGACGGuCGUCG--------CUACuuCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 38947 0.7 0.448069
Target:  5'- cGCcCUGCCAGCGguagcgcGCGgcGAAcagcGUGCGCa -3'
miRNA:   3'- -CGcGACGGUCGU-------CGCuaCUU----CAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 12284 0.7 0.449085
Target:  5'- uGCGCcaGCuCGGCaaGGUGAUGGAGcugGCGCu -3'
miRNA:   3'- -CGCGa-CG-GUCG--UCGCUACUUCa--UGCG- -5'
28019 3' -53.8 NC_005887.1 + 29792 0.7 0.449085
Target:  5'- cGCGCagcucggGCCAGUAGCug-GAAGUcugcggguguGCGCg -3'
miRNA:   3'- -CGCGa------CGGUCGUCGcuaCUUCA----------UGCG- -5'
28019 3' -53.8 NC_005887.1 + 37580 0.7 0.458285
Target:  5'- cGCGgaGCC-GCGGCGGaauucgGAucucgucAGUGCGCg -3'
miRNA:   3'- -CGCgaCGGuCGUCGCUa-----CU-------UCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 16698 0.7 0.459314
Target:  5'- cGCGCUG-CGGCuGGCGGUGAAGcucaaccUGCa -3'
miRNA:   3'- -CGCGACgGUCG-UCGCUACUUCau-----GCG- -5'
28019 3' -53.8 NC_005887.1 + 4675 0.7 0.459314
Target:  5'- cCGCUGCgCAGaCGGCGAgggucUGAuggGCGCg -3'
miRNA:   3'- cGCGACG-GUC-GUCGCU-----ACUucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 6428 0.7 0.459314
Target:  5'- cGUGUgGCCGGaCGGCcgcgccgaGAUcGAAGUGCGCg -3'
miRNA:   3'- -CGCGaCGGUC-GUCG--------CUA-CUUCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 35035 0.7 0.469665
Target:  5'- cGUGUUGUCGGCGGCGAcGGAcgGCGa -3'
miRNA:   3'- -CGCGACGGUCGUCGCUaCUUcaUGCg -5'
28019 3' -53.8 NC_005887.1 + 15836 0.7 0.480135
Target:  5'- aGCGCuUGCgCGGC-GCGAUcGAGGgaaACGCc -3'
miRNA:   3'- -CGCG-ACG-GUCGuCGCUA-CUUCa--UGCG- -5'
28019 3' -53.8 NC_005887.1 + 28502 0.69 0.512195
Target:  5'- cGCGC-GCCGGCGGgaaGAUGAcg-AUGCg -3'
miRNA:   3'- -CGCGaCGGUCGUCg--CUACUucaUGCG- -5'
28019 3' -53.8 NC_005887.1 + 5919 0.69 0.52308
Target:  5'- aGgGCaagaaGCCGGCcGCGcgGAaggcGGUGCGCa -3'
miRNA:   3'- -CgCGa----CGGUCGuCGCuaCU----UCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 32527 0.69 0.52308
Target:  5'- cGCGCUGaCCGGCuGCGAcgc-GUuCGCg -3'
miRNA:   3'- -CGCGAC-GGUCGuCGCUacuuCAuGCG- -5'
28019 3' -53.8 NC_005887.1 + 23393 0.69 0.52308
Target:  5'- cGCGCUGCCgcuGGCAGCc-UGcAGcaGCGCg -3'
miRNA:   3'- -CGCGACGG---UCGUCGcuACuUCa-UGCG- -5'
28019 3' -53.8 NC_005887.1 + 14132 0.69 0.527459
Target:  5'- cGCGCUGCuCAaaaccgccgagacgcGCGGCGcUGAugcgGCGCa -3'
miRNA:   3'- -CGCGACG-GU---------------CGUCGCuACUuca-UGCG- -5'
28019 3' -53.8 NC_005887.1 + 35751 0.69 0.530752
Target:  5'- gGUGCcGCCAGCGuCGAUGAcGUuguccuuguucucgGCGCu -3'
miRNA:   3'- -CGCGaCGGUCGUcGCUACUuCA--------------UGCG- -5'
28019 3' -53.8 NC_005887.1 + 15696 0.69 0.532951
Target:  5'- cGCGCgGCCGGaugauuccgccgcCGGCG-UGAAGgagcugACGCg -3'
miRNA:   3'- -CGCGaCGGUC-------------GUCGCuACUUCa-----UGCG- -5'
28019 3' -53.8 NC_005887.1 + 30009 0.69 0.534052
Target:  5'- cCGCcugGCCGGCgAGCGAc---GUACGCa -3'
miRNA:   3'- cGCGa--CGGUCG-UCGCUacuuCAUGCG- -5'
28019 3' -53.8 NC_005887.1 + 30254 0.69 0.545105
Target:  5'- uGCGCgGCCAGCAcGuCGGUGAccugaccgAGcgACGUg -3'
miRNA:   3'- -CGCGaCGGUCGU-C-GCUACU--------UCa-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.