miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 5' -62.7 NC_005887.1 + 18155 0.68 0.230004
Target:  5'- aCGCa-CGUCGGCaacacgacGCUgUGGGCGGCu -3'
miRNA:   3'- aGCGcaGCAGCCGga------CGA-GCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 30908 0.67 0.254162
Target:  5'- gCGCGUUGcgauccaugaucgCGGCCUGUUgCGcucagacgaugccuuGGCGGCg -3'
miRNA:   3'- aGCGCAGCa------------GCCGGACGA-GC---------------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 26977 0.79 0.037316
Target:  5'- gCGCGgCGUCGaCCUGCUCGGGCGuCa -3'
miRNA:   3'- aGCGCaGCAGCcGGACGAGCCCGCcG- -5'
28019 5' -62.7 NC_005887.1 + 8914 0.71 0.136721
Target:  5'- aCGCGaagcUCGUCGaggaucGUCUGCUCGGucGCGGUa -3'
miRNA:   3'- aGCGC----AGCAGC------CGGACGAGCC--CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 21015 0.69 0.187497
Target:  5'- gUCGUGuUCGUacCGGCCgaUGCggUCGGcGCGGUg -3'
miRNA:   3'- -AGCGC-AGCA--GCCGG--ACG--AGCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 32657 0.67 0.254162
Target:  5'- aUCGCugaGUCaUCGGUCUGCU-GGuCGGCg -3'
miRNA:   3'- -AGCG---CAGcAGCCGGACGAgCCcGCCG- -5'
28019 5' -62.7 NC_005887.1 + 1557 0.71 0.141921
Target:  5'- gCGCGUCGcCGccacgaaccucgaccGCCgGCUC-GGCGGCg -3'
miRNA:   3'- aGCGCAGCaGC---------------CGGaCGAGcCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34961 0.67 0.27362
Target:  5'- gCGauCGUCGUCGGCgaGCUgaacGCGGCg -3'
miRNA:   3'- aGC--GCAGCAGCCGgaCGAgcc-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34462 0.66 0.287243
Target:  5'- --uCGUCGcCGGCCUGCUCGu-CGGa -3'
miRNA:   3'- agcGCAGCaGCCGGACGAGCccGCCg -5'
28019 5' -62.7 NC_005887.1 + 36877 0.7 0.164576
Target:  5'- cUGCGcCaUCGGCCUGCgUCGuGGUGGa -3'
miRNA:   3'- aGCGCaGcAGCCGGACG-AGC-CCGCCg -5'
28019 5' -62.7 NC_005887.1 + 2421 0.74 0.081588
Target:  5'- gCGCGUCGUCGacgcGCCcgGCUCGaucugcGCGGCa -3'
miRNA:   3'- aGCGCAGCAGC----CGGa-CGAGCc-----CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 39992 0.68 0.230004
Target:  5'- --uCGUCGUCGGCCUGCgagCGcuGGUcGCc -3'
miRNA:   3'- agcGCAGCAGCCGGACGa--GC--CCGcCG- -5'
28019 5' -62.7 NC_005887.1 + 29763 0.67 0.254162
Target:  5'- -aGCGUCG-CGGCCgGgUCGG-CGGa -3'
miRNA:   3'- agCGCAGCaGCCGGaCgAGCCcGCCg -5'
28019 5' -62.7 NC_005887.1 + 11923 0.71 0.148086
Target:  5'- cCGCcccgaCGUCGGCCUGauggugggcgaaCUCGGcGUGGCg -3'
miRNA:   3'- aGCGca---GCAGCCGGAC------------GAGCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 977 0.71 0.129595
Target:  5'- gUCGCG-Ca-CGGUCUGCUCGaacgcuucccGGCGGCg -3'
miRNA:   3'- -AGCGCaGcaGCCGGACGAGC----------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28783 1.11 0.000104
Target:  5'- uUCGCGUCGUCGGCCUGCUCGGGCGGCa -3'
miRNA:   3'- -AGCGCAGCAGCCGGACGAGCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 40014 0.69 0.207814
Target:  5'- gUCGCGgugCGcaucaUGGCgCgGCUCGaGGCGGCc -3'
miRNA:   3'- -AGCGCa--GCa----GCCG-GaCGAGC-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 31169 0.66 0.294253
Target:  5'- aUCGUGUCG-C-GCCacuugUGCUCGGGCauGCg -3'
miRNA:   3'- -AGCGCAGCaGcCGG-----ACGAGCCCGc-CG- -5'
28019 5' -62.7 NC_005887.1 + 36861 0.66 0.287243
Target:  5'- aUCGCGaCG-CGcGCCUGUUCcuGGUGGUc -3'
miRNA:   3'- -AGCGCaGCaGC-CGGACGAGc-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28000 0.66 0.290031
Target:  5'- aUCGCGUCGUCGGCCgGCguuucuucaCGaauccacuucacugcGuCGGCg -3'
miRNA:   3'- -AGCGCAGCAGCCGGaCGa--------GC---------------CcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.