miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 5' -62.7 NC_005887.1 + 20479 0.73 0.101595
Target:  5'- aUGUGUUGaUGG-CUGCUCaGGGCGGCg -3'
miRNA:   3'- aGCGCAGCaGCCgGACGAG-CCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 20845 0.69 0.197427
Target:  5'- -gGCGUCGUUGcGCCgauUGC-C-GGCGGCg -3'
miRNA:   3'- agCGCAGCAGC-CGG---ACGaGcCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 21015 0.69 0.187497
Target:  5'- gUCGUGuUCGUacCGGCCgaUGCggUCGGcGCGGUg -3'
miRNA:   3'- -AGCGC-AGCA--GCCGG--ACG--AGCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 21061 0.67 0.27362
Target:  5'- --uCGUCGUCGGCgCcgGUgugGGGUGGCg -3'
miRNA:   3'- agcGCAGCAGCCG-Ga-CGag-CCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 21808 0.68 0.224276
Target:  5'- aCGaCGUcCG-CGGCgCUGC-CGGGCGcGCc -3'
miRNA:   3'- aGC-GCA-GCaGCCG-GACGaGCCCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 22278 0.74 0.086205
Target:  5'- -gGCGaucggauuucUCGUCGGCCUGUUCGGucUGGCa -3'
miRNA:   3'- agCGC----------AGCAGCCGGACGAGCCc-GCCG- -5'
28019 5' -62.7 NC_005887.1 + 22772 0.68 0.235856
Target:  5'- aCGUGcUCGUUGGCUcgacGC-CGGcGCGGCc -3'
miRNA:   3'- aGCGC-AGCAGCCGGa---CGaGCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 23945 0.68 0.237636
Target:  5'- cUCGCGgcgucugCGcacgcaccgacgaccUCGGCCcacUGCUCGagcgcgaGGCGGCg -3'
miRNA:   3'- -AGCGCa------GC---------------AGCCGG---ACGAGC-------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 24306 0.66 0.330523
Target:  5'- aUCGCccaaUCGUCGGCCgucaGUcCGGcgcgcguaagcgcGCGGCg -3'
miRNA:   3'- -AGCGc---AGCAGCCGGa---CGaGCC-------------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 25125 0.66 0.294253
Target:  5'- aCGCGaUCGUgucccacaCGcCCUGCUUGcGCGGCg -3'
miRNA:   3'- aGCGC-AGCA--------GCcGGACGAGCcCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 26977 0.79 0.037316
Target:  5'- gCGCGgCGUCGaCCUGCUCGGGCGuCa -3'
miRNA:   3'- aGCGCaGCAGCcGGACGAGCCCGCcG- -5'
28019 5' -62.7 NC_005887.1 + 27357 0.67 0.247934
Target:  5'- -gGCGgcaCGccugCGGCCUGCgCGGccugcGCGGCg -3'
miRNA:   3'- agCGCa--GCa---GCCGGACGaGCC-----CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 27409 0.7 0.164576
Target:  5'- gCGCGUCGUaCGGCa-GCgCGcGGCGuGCg -3'
miRNA:   3'- aGCGCAGCA-GCCGgaCGaGC-CCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 28000 0.66 0.290031
Target:  5'- aUCGCGUCGUCGGCCgGCguuucuucaCGaauccacuucacugcGuCGGCg -3'
miRNA:   3'- -AGCGCAGCAGCCGGaCGa--------GC---------------CcGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28026 0.73 0.099946
Target:  5'- cCGCGUucaccugcuugucggCGUCGGCCUGCgcuugCGGGUucaGCg -3'
miRNA:   3'- aGCGCA---------------GCAGCCGGACGa----GCCCGc--CG- -5'
28019 5' -62.7 NC_005887.1 + 28328 0.69 0.187497
Target:  5'- -aGCcuGUUGUCGGCguCUGCgcCGGcGCGGCa -3'
miRNA:   3'- agCG--CAGCAGCCG--GACGa-GCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28443 0.73 0.107278
Target:  5'- cUCGCGaagcugacccuUCGUCGGCUUGUUgcCGGGCcGCu -3'
miRNA:   3'- -AGCGC-----------AGCAGCCGGACGA--GCCCGcCG- -5'
28019 5' -62.7 NC_005887.1 + 28699 0.77 0.053779
Target:  5'- aUCGCGUucugcaCGUCGGUgCUGCUCGGcugaguGCGGCc -3'
miRNA:   3'- -AGCGCA------GCAGCCG-GACGAGCC------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28783 1.11 0.000104
Target:  5'- uUCGCGUCGUCGGCCUGCUCGGGCGGCa -3'
miRNA:   3'- -AGCGCAGCAGCCGGACGAGCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 29409 0.71 0.144205
Target:  5'- -aGCGUCG-CGGCUUGCU---GCGGCa -3'
miRNA:   3'- agCGCAGCaGCCGGACGAgccCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.