miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 5' -62.7 NC_005887.1 + 29763 0.67 0.254162
Target:  5'- -aGCGUCG-CGGCCgGgUCGG-CGGa -3'
miRNA:   3'- agCGCAGCaGCCGGaCgAGCCcGCCg -5'
28019 5' -62.7 NC_005887.1 + 30222 0.72 0.112951
Target:  5'- gCGCGaCGgCGGCCUGCUCGuccuggcgcuucuGcGCGGCc -3'
miRNA:   3'- aGCGCaGCaGCCGGACGAGC-------------C-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 30744 0.67 0.247934
Target:  5'- uUCGCGacuucgcCGUCGGUCaGCUCGaccgugcgcGCGGCg -3'
miRNA:   3'- -AGCGCa------GCAGCCGGaCGAGCc--------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 30908 0.67 0.254162
Target:  5'- gCGCGUUGcgauccaugaucgCGGCCUGUUgCGcucagacgaugccuuGGCGGCg -3'
miRNA:   3'- aGCGCAGCa------------GCCGGACGA-GC---------------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 31169 0.66 0.294253
Target:  5'- aUCGUGUCG-C-GCCacuugUGCUCGGGCauGCg -3'
miRNA:   3'- -AGCGCAGCaGcCGG-----ACGAGCCCGc-CG- -5'
28019 5' -62.7 NC_005887.1 + 32657 0.67 0.254162
Target:  5'- aUCGCugaGUCaUCGGUCUGCU-GGuCGGCg -3'
miRNA:   3'- -AGCG---CAGcAGCCGGACGAgCCcGCCG- -5'
28019 5' -62.7 NC_005887.1 + 33714 0.67 0.267004
Target:  5'- gCGCGgcgGUCGaUCUGCUCGaucGCGGCg -3'
miRNA:   3'- aGCGCag-CAGCcGGACGAGCc--CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 33929 0.7 0.179871
Target:  5'- uUCGCGUCGaccugccgacggcgcUCGGCgaGCacgUCGcGuGCGGCg -3'
miRNA:   3'- -AGCGCAGC---------------AGCCGgaCG---AGC-C-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34272 0.67 0.246704
Target:  5'- cUCGCGgcuugcgcaugcCGUC-GCCgUGCggcugacugCGGGCGGCa -3'
miRNA:   3'- -AGCGCa-----------GCAGcCGG-ACGa--------GCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34462 0.66 0.287243
Target:  5'- --uCGUCGcCGGCCUGCUCGu-CGGa -3'
miRNA:   3'- agcGCAGCaGCCGGACGAGCccGCCg -5'
28019 5' -62.7 NC_005887.1 + 34706 0.68 0.235856
Target:  5'- -gGcCGUCGUCGcGCUUGCggUGcGCGGCg -3'
miRNA:   3'- agC-GCAGCAGC-CGGACGa-GCcCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34961 0.67 0.27362
Target:  5'- gCGauCGUCGUCGGCgaGCUgaacGCGGCg -3'
miRNA:   3'- aGC--GCAGCAGCCGgaCGAgcc-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35033 0.71 0.144205
Target:  5'- gUCGUGUUGUCGGCg-GCgaCGGaCGGCg -3'
miRNA:   3'- -AGCGCAGCAGCCGgaCGa-GCCcGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35215 0.67 0.272952
Target:  5'- gUUGCGcagcagcUUGUCGGCCUGCgUgGGGCu-- -3'
miRNA:   3'- -AGCGC-------AGCAGCCGGACG-AgCCCGccg -5'
28019 5' -62.7 NC_005887.1 + 35545 0.68 0.218669
Target:  5'- -aGCGcCGaUGGUCUGCUCGacauguGCGGCg -3'
miRNA:   3'- agCGCaGCaGCCGGACGAGCc-----CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35735 0.69 0.206226
Target:  5'- gUCGCgGUCGU-GGCCcacucGCUCGGcuucucguucacgcGCGGCu -3'
miRNA:   3'- -AGCG-CAGCAgCCGGa----CGAGCC--------------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 36492 0.67 0.258599
Target:  5'- uUCGCGaUCaccggaaccgugcgGUCGaCCgcaGCaUCGGGCGGCg -3'
miRNA:   3'- -AGCGC-AG--------------CAGCcGGa--CG-AGCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 36861 0.66 0.287243
Target:  5'- aUCGCGaCG-CGcGCCUGUUCcuGGUGGUc -3'
miRNA:   3'- -AGCGCaGCaGC-CGGACGAGc-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 36877 0.7 0.164576
Target:  5'- cUGCGcCaUCGGCCUGCgUCGuGGUGGa -3'
miRNA:   3'- aGCGCaGcAGCCGGACG-AGC-CCGCCg -5'
28019 5' -62.7 NC_005887.1 + 36925 0.67 0.247934
Target:  5'- gCGCGUgGUCGcGCC-GgUCGcuGCGGCg -3'
miRNA:   3'- aGCGCAgCAGC-CGGaCgAGCc-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.