miRNA display CGI


Results 41 - 60 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 5' -62.7 NC_005887.1 + 22772 0.68 0.235856
Target:  5'- aCGUGcUCGUUGGCUcgacGC-CGGcGCGGCc -3'
miRNA:   3'- aGCGC-AGCAGCCGGa---CGaGCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34706 0.68 0.235856
Target:  5'- -gGcCGUCGUCGcGCUUGCggUGcGCGGCg -3'
miRNA:   3'- agC-GCAGCAGC-CGGACGa-GCcCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 23945 0.68 0.237636
Target:  5'- cUCGCGgcgucugCGcacgcaccgacgaccUCGGCCcacUGCUCGagcgcgaGGCGGCg -3'
miRNA:   3'- -AGCGCa------GC---------------AGCCGG---ACGAGC-------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34272 0.67 0.246704
Target:  5'- cUCGCGgcuugcgcaugcCGUC-GCCgUGCggcugacugCGGGCGGCa -3'
miRNA:   3'- -AGCGCa-----------GCAGcCGG-ACGa--------GCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 27357 0.67 0.247934
Target:  5'- -gGCGgcaCGccugCGGCCUGCgCGGccugcGCGGCg -3'
miRNA:   3'- agCGCa--GCa---GCCGGACGaGCC-----CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 30744 0.67 0.247934
Target:  5'- uUCGCGacuucgcCGUCGGUCaGCUCGaccgugcgcGCGGCg -3'
miRNA:   3'- -AGCGCa------GCAGCCGGaCGAGCc--------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 36925 0.67 0.247934
Target:  5'- gCGCGUgGUCGcGCC-GgUCGcuGCGGCg -3'
miRNA:   3'- aGCGCAgCAGC-CGGaCgAGCc-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 29763 0.67 0.254162
Target:  5'- -aGCGUCG-CGGCCgGgUCGG-CGGa -3'
miRNA:   3'- agCGCAGCaGCCGGaCgAGCCcGCCg -5'
28019 5' -62.7 NC_005887.1 + 32657 0.67 0.254162
Target:  5'- aUCGCugaGUCaUCGGUCUGCU-GGuCGGCg -3'
miRNA:   3'- -AGCG---CAGcAGCCGGACGAgCCcGCCG- -5'
28019 5' -62.7 NC_005887.1 + 30908 0.67 0.254162
Target:  5'- gCGCGUUGcgauccaugaucgCGGCCUGUUgCGcucagacgaugccuuGGCGGCg -3'
miRNA:   3'- aGCGCAGCa------------GCCGGACGA-GC---------------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 36492 0.67 0.258599
Target:  5'- uUCGCGaUCaccggaaccgugcgGUCGaCCgcaGCaUCGGGCGGCg -3'
miRNA:   3'- -AGCGC-AG--------------CAGCcGGa--CG-AGCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 33714 0.67 0.267004
Target:  5'- gCGCGgcgGUCGaUCUGCUCGaucGCGGCg -3'
miRNA:   3'- aGCGCag-CAGCcGGACGAGCc--CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35215 0.67 0.272952
Target:  5'- gUUGCGcagcagcUUGUCGGCCUGCgUgGGGCu-- -3'
miRNA:   3'- -AGCGC-------AGCAGCCGGACG-AgCCCGccg -5'
28019 5' -62.7 NC_005887.1 + 34961 0.67 0.27362
Target:  5'- gCGauCGUCGUCGGCgaGCUgaacGCGGCg -3'
miRNA:   3'- aGC--GCAGCAGCCGgaCGAgcc-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 21061 0.67 0.27362
Target:  5'- --uCGUCGUCGGCgCcgGUgugGGGUGGCg -3'
miRNA:   3'- agcGCAGCAGCCG-Ga-CGag-CCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 36861 0.66 0.287243
Target:  5'- aUCGCGaCG-CGcGCCUGUUCcuGGUGGUc -3'
miRNA:   3'- -AGCGCaGCaGC-CGGACGAGc-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34462 0.66 0.287243
Target:  5'- --uCGUCGcCGGCCUGCUCGu-CGGa -3'
miRNA:   3'- agcGCAGCaGCCGGACGAGCccGCCg -5'
28019 5' -62.7 NC_005887.1 + 28000 0.66 0.290031
Target:  5'- aUCGCGUCGUCGGCCgGCguuucuucaCGaauccacuucacugcGuCGGCg -3'
miRNA:   3'- -AGCGCAGCAGCCGGaCGa--------GC---------------CcGCCG- -5'
28019 5' -62.7 NC_005887.1 + 5348 0.66 0.294253
Target:  5'- uUCGCGUa--CGGCCUGCgcgugcUCGccGGCGaGCu -3'
miRNA:   3'- -AGCGCAgcaGCCGGACG------AGC--CCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 25125 0.66 0.294253
Target:  5'- aCGCGaUCGUgucccacaCGcCCUGCUUGcGCGGCg -3'
miRNA:   3'- aGCGC-AGCA--------GCcGGACGAGCcCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.