miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 5' -62.7 NC_005887.1 + 21015 0.69 0.187497
Target:  5'- gUCGUGuUCGUacCGGCCgaUGCggUCGGcGCGGUg -3'
miRNA:   3'- -AGCGC-AGCA--GCCGG--ACG--AGCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28328 0.69 0.187497
Target:  5'- -aGCcuGUUGUCGGCguCUGCgcCGGcGCGGCa -3'
miRNA:   3'- agCG--CAGCAGCCG--GACGa-GCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 33929 0.7 0.179871
Target:  5'- uUCGCGUCGaccugccgacggcgcUCGGCgaGCacgUCGcGuGCGGCg -3'
miRNA:   3'- -AGCGCAGC---------------AGCCGgaCG---AGC-C-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 17243 0.7 0.175246
Target:  5'- aUCGCGUaCGgcggcgucaauaagaUCGuGCCggGCgagacgUCGGGCGGCg -3'
miRNA:   3'- -AGCGCA-GC---------------AGC-CGGa-CG------AGCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 3445 0.7 0.168508
Target:  5'- -gGCG-CGaccuaccagagcaUCGGUCUGUUCGGGCcuGGCg -3'
miRNA:   3'- agCGCaGC-------------AGCCGGACGAGCCCG--CCG- -5'
28019 5' -62.7 NC_005887.1 + 36877 0.7 0.164576
Target:  5'- cUGCGcCaUCGGCCUGCgUCGuGGUGGa -3'
miRNA:   3'- aGCGCaGcAGCCGGACG-AGC-CCGCCg -5'
28019 5' -62.7 NC_005887.1 + 27409 0.7 0.164576
Target:  5'- gCGCGUCGUaCGGCa-GCgCGcGGCGuGCg -3'
miRNA:   3'- aGCGCAGCA-GCCGgaCGaGC-CCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 4500 0.7 0.160305
Target:  5'- gCGCGcaUCG-CGcGUCUGCUCGccgacuacGGCGGCg -3'
miRNA:   3'- aGCGC--AGCaGC-CGGACGAGC--------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 37596 0.7 0.152062
Target:  5'- cCGCGcUCGUCGcaaaagcaccGCCgguauUGCUCGcGGCGGUu -3'
miRNA:   3'- aGCGC-AGCAGC----------CGG-----ACGAGC-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 18586 0.7 0.15166
Target:  5'- gUCGCGgcguuccaGUCGGCCgauuacgguucguUGCUCGgcagcgcgaucGGCGGCc -3'
miRNA:   3'- -AGCGCag------CAGCCGG-------------ACGAGC-----------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 11923 0.71 0.148086
Target:  5'- cCGCcccgaCGUCGGCCUGauggugggcgaaCUCGGcGUGGCg -3'
miRNA:   3'- aGCGca---GCAGCCGGAC------------GAGCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35033 0.71 0.144205
Target:  5'- gUCGUGUUGUCGGCg-GCgaCGGaCGGCg -3'
miRNA:   3'- -AGCGCAGCAGCCGgaCGa-GCCcGCCG- -5'
28019 5' -62.7 NC_005887.1 + 29409 0.71 0.144205
Target:  5'- -aGCGUCG-CGGCUUGCU---GCGGCa -3'
miRNA:   3'- agCGCAGCaGCCGGACGAgccCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 1557 0.71 0.141921
Target:  5'- gCGCGUCGcCGccacgaaccucgaccGCCgGCUC-GGCGGCg -3'
miRNA:   3'- aGCGCAGCaGC---------------CGGaCGAGcCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 8914 0.71 0.136721
Target:  5'- aCGCGaagcUCGUCGaggaucGUCUGCUCGGucGCGGUa -3'
miRNA:   3'- aGCGC----AGCAGC------CGGACGAGCC--CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 977 0.71 0.129595
Target:  5'- gUCGCG-Ca-CGGUCUGCUCGaacgcuucccGGCGGCg -3'
miRNA:   3'- -AGCGCaGcaGCCGGACGAGC----------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 41273 0.72 0.113258
Target:  5'- -gGCGcCGUCGaCCUGCgcaCGGGCGcGCu -3'
miRNA:   3'- agCGCaGCAGCcGGACGa--GCCCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 30222 0.72 0.112951
Target:  5'- gCGCGaCGgCGGCCUGCUCGuccuggcgcuucuGcGCGGCc -3'
miRNA:   3'- aGCGCaGCaGCCGGACGAGC-------------C-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28443 0.73 0.107278
Target:  5'- cUCGCGaagcugacccuUCGUCGGCUUGUUgcCGGGCcGCu -3'
miRNA:   3'- -AGCGC-----------AGCAGCCGGACGA--GCCCGcCG- -5'
28019 5' -62.7 NC_005887.1 + 20479 0.73 0.101595
Target:  5'- aUGUGUUGaUGG-CUGCUCaGGGCGGCg -3'
miRNA:   3'- aGCGCAGCaGCCgGACGAG-CCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.