Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28019 | 5' | -62.7 | NC_005887.1 | + | 28026 | 0.73 | 0.099946 |
Target: 5'- cCGCGUucaccugcuugucggCGUCGGCCUGCgcuugCGGGUucaGCg -3' miRNA: 3'- aGCGCA---------------GCAGCCGGACGa----GCCCGc--CG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 14196 | 0.73 | 0.098861 |
Target: 5'- gCGCuGUCGggcgCGGCCUcGgaCaGGGCGGCg -3' miRNA: 3'- aGCG-CAGCa---GCCGGA-CgaG-CCCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 1912 | 0.74 | 0.091071 |
Target: 5'- aCGCGUUcuuUCGGCa-GC-CGGGCGGCg -3' miRNA: 3'- aGCGCAGc--AGCCGgaCGaGCCCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 22278 | 0.74 | 0.086205 |
Target: 5'- -gGCGaucggauuucUCGUCGGCCUGUUCGGucUGGCa -3' miRNA: 3'- agCGC----------AGCAGCCGGACGAGCCc-GCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 2421 | 0.74 | 0.081588 |
Target: 5'- gCGCGUCGUCGacgcGCCcgGCUCGaucugcGCGGCa -3' miRNA: 3'- aGCGCAGCAGC----CGGa-CGAGCc-----CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 1388 | 0.75 | 0.065195 |
Target: 5'- gUCGCGcUCGUUcaucaugGGCCcGCUCGGcaGCGGCa -3' miRNA: 3'- -AGCGC-AGCAG-------CCGGaCGAGCC--CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 28699 | 0.77 | 0.053779 |
Target: 5'- aUCGCGUucugcaCGUCGGUgCUGCUCGGcugaguGCGGCc -3' miRNA: 3'- -AGCGCA------GCAGCCG-GACGAGCC------CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 18779 | 0.78 | 0.04419 |
Target: 5'- gUCGCGUucgcacUGcCGGCCgGCgaugCGGGCGGCg -3' miRNA: 3'- -AGCGCA------GCaGCCGGaCGa---GCCCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 26977 | 0.79 | 0.037316 |
Target: 5'- gCGCGgCGUCGaCCUGCUCGGGCGuCa -3' miRNA: 3'- aGCGCaGCAGCcGGACGAGCCCGCcG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 28783 | 1.11 | 0.000104 |
Target: 5'- uUCGCGUCGUCGGCCUGCUCGGGCGGCa -3' miRNA: 3'- -AGCGCAGCAGCCGGACGAGCCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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