miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 5' -62.7 NC_005887.1 + 34462 0.66 0.287243
Target:  5'- --uCGUCGcCGGCCUGCUCGu-CGGa -3'
miRNA:   3'- agcGCAGCaGCCGGACGAGCccGCCg -5'
28019 5' -62.7 NC_005887.1 + 34272 0.67 0.246704
Target:  5'- cUCGCGgcuugcgcaugcCGUC-GCCgUGCggcugacugCGGGCGGCa -3'
miRNA:   3'- -AGCGCa-----------GCAGcCGG-ACGa--------GCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 33929 0.7 0.179871
Target:  5'- uUCGCGUCGaccugccgacggcgcUCGGCgaGCacgUCGcGuGCGGCg -3'
miRNA:   3'- -AGCGCAGC---------------AGCCGgaCG---AGC-C-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 33714 0.67 0.267004
Target:  5'- gCGCGgcgGUCGaUCUGCUCGaucGCGGCg -3'
miRNA:   3'- aGCGCag-CAGCcGGACGAGCc--CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 32657 0.67 0.254162
Target:  5'- aUCGCugaGUCaUCGGUCUGCU-GGuCGGCg -3'
miRNA:   3'- -AGCG---CAGcAGCCGGACGAgCCcGCCG- -5'
28019 5' -62.7 NC_005887.1 + 31169 0.66 0.294253
Target:  5'- aUCGUGUCG-C-GCCacuugUGCUCGGGCauGCg -3'
miRNA:   3'- -AGCGCAGCaGcCGG-----ACGAGCCCGc-CG- -5'
28019 5' -62.7 NC_005887.1 + 30908 0.67 0.254162
Target:  5'- gCGCGUUGcgauccaugaucgCGGCCUGUUgCGcucagacgaugccuuGGCGGCg -3'
miRNA:   3'- aGCGCAGCa------------GCCGGACGA-GC---------------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 30744 0.67 0.247934
Target:  5'- uUCGCGacuucgcCGUCGGUCaGCUCGaccgugcgcGCGGCg -3'
miRNA:   3'- -AGCGCa------GCAGCCGGaCGAGCc--------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 30222 0.72 0.112951
Target:  5'- gCGCGaCGgCGGCCUGCUCGuccuggcgcuucuGcGCGGCc -3'
miRNA:   3'- aGCGCaGCaGCCGGACGAGC-------------C-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 29763 0.67 0.254162
Target:  5'- -aGCGUCG-CGGCCgGgUCGG-CGGa -3'
miRNA:   3'- agCGCAGCaGCCGGaCgAGCCcGCCg -5'
28019 5' -62.7 NC_005887.1 + 29409 0.71 0.144205
Target:  5'- -aGCGUCG-CGGCUUGCU---GCGGCa -3'
miRNA:   3'- agCGCAGCaGCCGGACGAgccCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28783 1.11 0.000104
Target:  5'- uUCGCGUCGUCGGCCUGCUCGGGCGGCa -3'
miRNA:   3'- -AGCGCAGCAGCCGGACGAGCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28699 0.77 0.053779
Target:  5'- aUCGCGUucugcaCGUCGGUgCUGCUCGGcugaguGCGGCc -3'
miRNA:   3'- -AGCGCA------GCAGCCG-GACGAGCC------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28443 0.73 0.107278
Target:  5'- cUCGCGaagcugacccuUCGUCGGCUUGUUgcCGGGCcGCu -3'
miRNA:   3'- -AGCGC-----------AGCAGCCGGACGA--GCCCGcCG- -5'
28019 5' -62.7 NC_005887.1 + 28328 0.69 0.187497
Target:  5'- -aGCcuGUUGUCGGCguCUGCgcCGGcGCGGCa -3'
miRNA:   3'- agCG--CAGCAGCCG--GACGa-GCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 28026 0.73 0.099946
Target:  5'- cCGCGUucaccugcuugucggCGUCGGCCUGCgcuugCGGGUucaGCg -3'
miRNA:   3'- aGCGCA---------------GCAGCCGGACGa----GCCCGc--CG- -5'
28019 5' -62.7 NC_005887.1 + 28000 0.66 0.290031
Target:  5'- aUCGCGUCGUCGGCCgGCguuucuucaCGaauccacuucacugcGuCGGCg -3'
miRNA:   3'- -AGCGCAGCAGCCGGaCGa--------GC---------------CcGCCG- -5'
28019 5' -62.7 NC_005887.1 + 27409 0.7 0.164576
Target:  5'- gCGCGUCGUaCGGCa-GCgCGcGGCGuGCg -3'
miRNA:   3'- aGCGCAGCA-GCCGgaCGaGC-CCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 27357 0.67 0.247934
Target:  5'- -gGCGgcaCGccugCGGCCUGCgCGGccugcGCGGCg -3'
miRNA:   3'- agCGCa--GCa---GCCGGACGaGCC-----CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 26977 0.79 0.037316
Target:  5'- gCGCGgCGUCGaCCUGCUCGGGCGuCa -3'
miRNA:   3'- aGCGCaGCAGCcGGACGAGCCCGCcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.