miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 5' -62.7 NC_005887.1 + 41273 0.72 0.113258
Target:  5'- -gGCGcCGUCGaCCUGCgcaCGGGCGcGCu -3'
miRNA:   3'- agCGCaGCAGCcGGACGa--GCCCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 40775 0.68 0.218669
Target:  5'- gCGCGcCGcCGaGCCggcggucgagGUUCGuGGCGGCg -3'
miRNA:   3'- aGCGCaGCaGC-CGGa---------CGAGC-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 40014 0.69 0.207814
Target:  5'- gUCGCGgugCGcaucaUGGCgCgGCUCGaGGCGGCc -3'
miRNA:   3'- -AGCGCa--GCa----GCCG-GaCGAGC-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 39992 0.68 0.230004
Target:  5'- --uCGUCGUCGGCCUGCgagCGcuGGUcGCc -3'
miRNA:   3'- agcGCAGCAGCCGGACGa--GC--CCGcCG- -5'
28019 5' -62.7 NC_005887.1 + 39804 0.66 0.330523
Target:  5'- gCGCGUCGUCacuucGCaCUGCUggauaaagcgcgaCGGGCcGCc -3'
miRNA:   3'- aGCGCAGCAGc----CG-GACGA-------------GCCCGcCG- -5'
28019 5' -62.7 NC_005887.1 + 39303 0.68 0.230004
Target:  5'- uUCGCGUCGUCguucgucauuGGCCgaGCaUGGcuuugcccGCGGCg -3'
miRNA:   3'- -AGCGCAGCAG----------CCGGa-CGaGCC--------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 37761 0.66 0.323621
Target:  5'- gUUGCaucugCG-CGGCCUGCgccucGGCGGCu -3'
miRNA:   3'- -AGCGca---GCaGCCGGACGagc--CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 37724 0.66 0.323621
Target:  5'- aUCGCGcCGgCGGCCaccgGCgcCGcGGCGaGCa -3'
miRNA:   3'- -AGCGCaGCaGCCGGa---CGa-GC-CCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 37596 0.7 0.152062
Target:  5'- cCGCGcUCGUCGcaaaagcaccGCCgguauUGCUCGcGGCGGUu -3'
miRNA:   3'- aGCGC-AGCAGC----------CGG-----ACGAGC-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 37056 0.66 0.307937
Target:  5'- -gGCGuagaacuUCGcCGcGCgCUGCUCGGGCGacuGCg -3'
miRNA:   3'- agCGC-------AGCaGC-CG-GACGAGCCCGC---CG- -5'
28019 5' -62.7 NC_005887.1 + 36925 0.67 0.247934
Target:  5'- gCGCGUgGUCGcGCC-GgUCGcuGCGGCg -3'
miRNA:   3'- aGCGCAgCAGC-CGGaCgAGCc-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 36877 0.7 0.164576
Target:  5'- cUGCGcCaUCGGCCUGCgUCGuGGUGGa -3'
miRNA:   3'- aGCGCaGcAGCCGGACG-AGC-CCGCCg -5'
28019 5' -62.7 NC_005887.1 + 36861 0.66 0.287243
Target:  5'- aUCGCGaCG-CGcGCCUGUUCcuGGUGGUc -3'
miRNA:   3'- -AGCGCaGCaGC-CGGACGAGc-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 36492 0.67 0.258599
Target:  5'- uUCGCGaUCaccggaaccgugcgGUCGaCCgcaGCaUCGGGCGGCg -3'
miRNA:   3'- -AGCGC-AG--------------CAGCcGGa--CG-AGCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35735 0.69 0.206226
Target:  5'- gUCGCgGUCGU-GGCCcacucGCUCGGcuucucguucacgcGCGGCu -3'
miRNA:   3'- -AGCG-CAGCAgCCGGa----CGAGCC--------------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35545 0.68 0.218669
Target:  5'- -aGCGcCGaUGGUCUGCUCGacauguGCGGCg -3'
miRNA:   3'- agCGCaGCaGCCGGACGAGCc-----CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35215 0.67 0.272952
Target:  5'- gUUGCGcagcagcUUGUCGGCCUGCgUgGGGCu-- -3'
miRNA:   3'- -AGCGC-------AGCAGCCGGACG-AgCCCGccg -5'
28019 5' -62.7 NC_005887.1 + 35033 0.71 0.144205
Target:  5'- gUCGUGUUGUCGGCg-GCgaCGGaCGGCg -3'
miRNA:   3'- -AGCGCAGCAGCCGgaCGa-GCCcGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34961 0.67 0.27362
Target:  5'- gCGauCGUCGUCGGCgaGCUgaacGCGGCg -3'
miRNA:   3'- aGC--GCAGCAGCCGgaCGAgcc-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34706 0.68 0.235856
Target:  5'- -gGcCGUCGUCGcGCUUGCggUGcGCGGCg -3'
miRNA:   3'- agC-GCAGCAGC-CGGACGa-GCcCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.