miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 5' -62.7 NC_005887.1 + 977 0.71 0.129595
Target:  5'- gUCGCG-Ca-CGGUCUGCUCGaacgcuucccGGCGGCg -3'
miRNA:   3'- -AGCGCaGcaGCCGGACGAGC----------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 1388 0.75 0.065195
Target:  5'- gUCGCGcUCGUUcaucaugGGCCcGCUCGGcaGCGGCa -3'
miRNA:   3'- -AGCGC-AGCAG-------CCGGaCGAGCC--CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 1557 0.71 0.141921
Target:  5'- gCGCGUCGcCGccacgaaccucgaccGCCgGCUC-GGCGGCg -3'
miRNA:   3'- aGCGCAGCaGC---------------CGGaCGAGcCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 1912 0.74 0.091071
Target:  5'- aCGCGUUcuuUCGGCa-GC-CGGGCGGCg -3'
miRNA:   3'- aGCGCAGc--AGCCGgaCGaGCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 2006 0.66 0.331296
Target:  5'- cCGCGcUCGaCGGCCaGUccauuUC-GGCGGCg -3'
miRNA:   3'- aGCGC-AGCaGCCGGaCG-----AGcCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 2421 0.74 0.081588
Target:  5'- gCGCGUCGUCGacgcGCCcgGCUCGaucugcGCGGCa -3'
miRNA:   3'- aGCGCAGCAGC----CGGa-CGAGCc-----CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 3445 0.7 0.168508
Target:  5'- -gGCG-CGaccuaccagagcaUCGGUCUGUUCGGGCcuGGCg -3'
miRNA:   3'- agCGCaGC-------------AGCCGGACGAGCCCG--CCG- -5'
28019 5' -62.7 NC_005887.1 + 4500 0.7 0.160305
Target:  5'- gCGCGcaUCG-CGcGUCUGCUCGccgacuacGGCGGCg -3'
miRNA:   3'- aGCGC--AGCaGC-CGGACGAGC--------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 5348 0.66 0.294253
Target:  5'- uUCGCGUa--CGGCCUGCgcgugcUCGccGGCGaGCu -3'
miRNA:   3'- -AGCGCAgcaGCCGGACG------AGC--CCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 7106 0.66 0.301395
Target:  5'- aUCGCG-CGU-GGUCUaacgagGCg-GGGCGGCg -3'
miRNA:   3'- -AGCGCaGCAgCCGGA------CGagCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 7595 0.66 0.323621
Target:  5'- aUCGCGUaagCGGCgCcgGUUgaucgaUGGGCGGCg -3'
miRNA:   3'- -AGCGCAgcaGCCG-Ga-CGA------GCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 8914 0.71 0.136721
Target:  5'- aCGCGaagcUCGUCGaggaucGUCUGCUCGGucGCGGUa -3'
miRNA:   3'- aGCGC----AGCAGC------CGGACGAGCC--CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 11923 0.71 0.148086
Target:  5'- cCGCcccgaCGUCGGCCUGauggugggcgaaCUCGGcGUGGCg -3'
miRNA:   3'- aGCGca---GCAGCCGGAC------------GAGCC-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 14196 0.73 0.098861
Target:  5'- gCGCuGUCGggcgCGGCCUcGgaCaGGGCGGCg -3'
miRNA:   3'- aGCG-CAGCa---GCCGGA-CgaG-CCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 17243 0.7 0.175246
Target:  5'- aUCGCGUaCGgcggcgucaauaagaUCGuGCCggGCgagacgUCGGGCGGCg -3'
miRNA:   3'- -AGCGCA-GC---------------AGC-CGGa-CG------AGCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 17684 0.66 0.316079
Target:  5'- -gGCGaCGUCGGCacgaUGUUCGugacGGcCGGCu -3'
miRNA:   3'- agCGCaGCAGCCGg---ACGAGC----CC-GCCG- -5'
28019 5' -62.7 NC_005887.1 + 18155 0.68 0.230004
Target:  5'- aCGCa-CGUCGGCaacacgacGCUgUGGGCGGCu -3'
miRNA:   3'- aGCGcaGCAGCCGga------CGA-GCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 18586 0.7 0.15166
Target:  5'- gUCGCGgcguuccaGUCGGCCgauuacgguucguUGCUCGgcagcgcgaucGGCGGCc -3'
miRNA:   3'- -AGCGCag------CAGCCGG-------------ACGAGC-----------CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 18779 0.78 0.04419
Target:  5'- gUCGCGUucgcacUGcCGGCCgGCgaugCGGGCGGCg -3'
miRNA:   3'- -AGCGCA------GCaGCCGGaCGa---GCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 18884 0.68 0.224276
Target:  5'- -gGCGUCGcCGGCUgccggGCUucCGGuggaaGCGGCg -3'
miRNA:   3'- agCGCAGCaGCCGGa----CGA--GCC-----CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.