miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28020 5' -51.2 NC_005887.1 + 26150 0.66 0.893006
Target:  5'- -----gCGUGUCCGgUCGC-AGCGCGg -3'
miRNA:   3'- ccuaaaGCACGGGCaAGCGgUUGUGC- -5'
28020 5' -51.2 NC_005887.1 + 18839 0.66 0.885453
Target:  5'- --------cGCgCGUUCGUCAGCGCGg -3'
miRNA:   3'- ccuaaagcaCGgGCAAGCGGUUGUGC- -5'
28020 5' -51.2 NC_005887.1 + 31206 0.66 0.885452
Target:  5'- aGAUUUCGggcGCCgCGUgcuucaGCaCGACGCGa -3'
miRNA:   3'- cCUAAAGCa--CGG-GCAag----CG-GUUGUGC- -5'
28020 5' -51.2 NC_005887.1 + 38867 0.66 0.869518
Target:  5'- cGAcgUCGUGCUCGaUCaUCAGCGCGc -3'
miRNA:   3'- cCUaaAGCACGGGCaAGcGGUUGUGC- -5'
28020 5' -51.2 NC_005887.1 + 2172 0.66 0.86115
Target:  5'- uGGAcUUCG-GCCUGa-CGCCGGcCGCGg -3'
miRNA:   3'- -CCUaAAGCaCGGGCaaGCGGUU-GUGC- -5'
28020 5' -51.2 NC_005887.1 + 28568 0.66 0.86115
Target:  5'- aGGcg-UCGccGCCCGcugCGCgGACGCGg -3'
miRNA:   3'- -CCuaaAGCa-CGGGCaa-GCGgUUGUGC- -5'
28020 5' -51.2 NC_005887.1 + 24211 0.66 0.86115
Target:  5'- cGAcgUCGgcgGCCCGcgcUUCGCCGguugcguacaGCGCGu -3'
miRNA:   3'- cCUaaAGCa--CGGGC---AAGCGGU----------UGUGC- -5'
28020 5' -51.2 NC_005887.1 + 7016 0.66 0.852526
Target:  5'- ----cUCGUGgCCGgcCGCCGcggcGCGCGg -3'
miRNA:   3'- ccuaaAGCACgGGCaaGCGGU----UGUGC- -5'
28020 5' -51.2 NC_005887.1 + 24113 0.67 0.843653
Target:  5'- ------gGUGCCCGgcgUgGCCGAgGCGa -3'
miRNA:   3'- ccuaaagCACGGGCa--AgCGGUUgUGC- -5'
28020 5' -51.2 NC_005887.1 + 28451 0.67 0.834542
Target:  5'- -----aCGUGCCaCGaaUGCCGACGCGc -3'
miRNA:   3'- ccuaaaGCACGG-GCaaGCGGUUGUGC- -5'
28020 5' -51.2 NC_005887.1 + 235 0.67 0.805882
Target:  5'- aGGAUcgccacaaGUcCUCGUUCGUCGACGCGg -3'
miRNA:   3'- -CCUAaag-----CAcGGGCAAGCGGUUGUGC- -5'
28020 5' -51.2 NC_005887.1 + 37942 0.67 0.805882
Target:  5'- aGGAUcgcCGcGCCU--UCGCCGGCGCGc -3'
miRNA:   3'- -CCUAaa-GCaCGGGcaAGCGGUUGUGC- -5'
28020 5' -51.2 NC_005887.1 + 1594 0.67 0.805882
Target:  5'- uGGGUggCG-GCCuCGaacCGCCAACGCa -3'
miRNA:   3'- -CCUAaaGCaCGG-GCaa-GCGGUUGUGc -5'
28020 5' -51.2 NC_005887.1 + 12326 0.68 0.775465
Target:  5'- aGGGUggcgUCG-GCgCGUUCGUCAcguuCACGa -3'
miRNA:   3'- -CCUAa---AGCaCGgGCAAGCGGUu---GUGC- -5'
28020 5' -51.2 NC_005887.1 + 7965 0.68 0.764991
Target:  5'- cGGGccUCGcGCCCGgcCGCCucugauACGCGg -3'
miRNA:   3'- -CCUaaAGCaCGGGCaaGCGGu-----UGUGC- -5'
28020 5' -51.2 NC_005887.1 + 6781 0.68 0.754371
Target:  5'- aGGccg-UGUGCCCGgcgcUCGCCGcACAUGu -3'
miRNA:   3'- -CCuaaaGCACGGGCa---AGCGGU-UGUGC- -5'
28020 5' -51.2 NC_005887.1 + 24675 0.69 0.743617
Target:  5'- ----aUCGUGCCgaCG-UCGCCAAgCGCGg -3'
miRNA:   3'- ccuaaAGCACGG--GCaAGCGGUU-GUGC- -5'
28020 5' -51.2 NC_005887.1 + 35965 0.69 0.743617
Target:  5'- ----cUCGUGCCC-UUCGCCc-CGCGu -3'
miRNA:   3'- ccuaaAGCACGGGcAAGCGGuuGUGC- -5'
28020 5' -51.2 NC_005887.1 + 33051 0.7 0.687159
Target:  5'- cGGcGUUUCgGUGCCCGUaaccugcggcgUCGCCGugccgaccgccguGCACa -3'
miRNA:   3'- -CC-UAAAG-CACGGGCA-----------AGCGGU-------------UGUGc -5'
28020 5' -51.2 NC_005887.1 + 13994 0.7 0.672467
Target:  5'- cGcgUUCGUGCUCGaagccaaugccgCGCCGGCGCa -3'
miRNA:   3'- cCuaAAGCACGGGCaa----------GCGGUUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.