miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28020 5' -51.2 NC_005887.1 + 28516 1.11 0.001682
Target:  5'- gGGAUUUCGUGCCCGUUCGCCAACACGc -3'
miRNA:   3'- -CCUAAAGCACGGGCAAGCGGUUGUGC- -5'
28020 5' -51.2 NC_005887.1 + 34333 0.76 0.342372
Target:  5'- aGGGUUUUGUG-CCGUggCGCCGGcCACGg -3'
miRNA:   3'- -CCUAAAGCACgGGCAa-GCGGUU-GUGC- -5'
28020 5' -51.2 NC_005887.1 + 9550 0.73 0.496456
Target:  5'- ---gUUCGUGCCCGUgaagcggcgcgCGCCGauccugcGCACGa -3'
miRNA:   3'- ccuaAAGCACGGGCAa----------GCGGU-------UGUGC- -5'
28020 5' -51.2 NC_005887.1 + 22772 0.72 0.529022
Target:  5'- -----aCGUGCUCGUUggcucgaCGCCGGCGCGg -3'
miRNA:   3'- ccuaaaGCACGGGCAA-------GCGGUUGUGC- -5'
28020 5' -51.2 NC_005887.1 + 39468 0.72 0.541163
Target:  5'- -----aCGUGUCCGUcgUCGCCuGCGCGu -3'
miRNA:   3'- ccuaaaGCACGGGCA--AGCGGuUGUGC- -5'
28020 5' -51.2 NC_005887.1 + 21046 0.72 0.572456
Target:  5'- cGGUgggCGUGCCCGUgaaugugggcgaCGCCAGCAgCGc -3'
miRNA:   3'- cCUAaa-GCACGGGCAa-----------GCGGUUGU-GC- -5'
28020 5' -51.2 NC_005887.1 + 24770 0.72 0.574709
Target:  5'- gGGAUUgacgggCGUGUUCGUcgCGCCGGuCACGu -3'
miRNA:   3'- -CCUAAa-----GCACGGGCAa-GCGGUU-GUGC- -5'
28020 5' -51.2 NC_005887.1 + 26109 0.7 0.665661
Target:  5'- ------gGUGCCCGUgcgcUCGCCGGC-CGg -3'
miRNA:   3'- ccuaaagCACGGGCA----AGCGGUUGuGC- -5'
28020 5' -51.2 NC_005887.1 + 7301 0.7 0.665661
Target:  5'- uGGGUcgUCGUGUcgCCGUccgUCGCCGccgacaACACGa -3'
miRNA:   3'- -CCUAa-AGCACG--GGCA---AGCGGU------UGUGC- -5'
28020 5' -51.2 NC_005887.1 + 13994 0.7 0.672467
Target:  5'- cGcgUUCGUGCUCGaagccaaugccgCGCCGGCGCa -3'
miRNA:   3'- cCuaAAGCACGGGCaa----------GCGGUUGUGc -5'
28020 5' -51.2 NC_005887.1 + 33051 0.7 0.687159
Target:  5'- cGGcGUUUCgGUGCCCGUaaccugcggcgUCGCCGugccgaccgccguGCACa -3'
miRNA:   3'- -CC-UAAAG-CACGGGCA-----------AGCGGU-------------UGUGc -5'
28020 5' -51.2 NC_005887.1 + 24675 0.69 0.743617
Target:  5'- ----aUCGUGCCgaCG-UCGCCAAgCGCGg -3'
miRNA:   3'- ccuaaAGCACGG--GCaAGCGGUU-GUGC- -5'
28020 5' -51.2 NC_005887.1 + 35965 0.69 0.743617
Target:  5'- ----cUCGUGCCC-UUCGCCc-CGCGu -3'
miRNA:   3'- ccuaaAGCACGGGcAAGCGGuuGUGC- -5'
28020 5' -51.2 NC_005887.1 + 6781 0.68 0.754371
Target:  5'- aGGccg-UGUGCCCGgcgcUCGCCGcACAUGu -3'
miRNA:   3'- -CCuaaaGCACGGGCa---AGCGGU-UGUGC- -5'
28020 5' -51.2 NC_005887.1 + 7965 0.68 0.764991
Target:  5'- cGGGccUCGcGCCCGgcCGCCucugauACGCGg -3'
miRNA:   3'- -CCUaaAGCaCGGGCaaGCGGu-----UGUGC- -5'
28020 5' -51.2 NC_005887.1 + 12326 0.68 0.775465
Target:  5'- aGGGUggcgUCG-GCgCGUUCGUCAcguuCACGa -3'
miRNA:   3'- -CCUAa---AGCaCGgGCAAGCGGUu---GUGC- -5'
28020 5' -51.2 NC_005887.1 + 1594 0.67 0.805882
Target:  5'- uGGGUggCG-GCCuCGaacCGCCAACGCa -3'
miRNA:   3'- -CCUAaaGCaCGG-GCaa-GCGGUUGUGc -5'
28020 5' -51.2 NC_005887.1 + 37942 0.67 0.805882
Target:  5'- aGGAUcgcCGcGCCU--UCGCCGGCGCGc -3'
miRNA:   3'- -CCUAaa-GCaCGGGcaAGCGGUUGUGC- -5'
28020 5' -51.2 NC_005887.1 + 235 0.67 0.805882
Target:  5'- aGGAUcgccacaaGUcCUCGUUCGUCGACGCGg -3'
miRNA:   3'- -CCUAaag-----CAcGGGCAAGCGGUUGUGC- -5'
28020 5' -51.2 NC_005887.1 + 28451 0.67 0.834542
Target:  5'- -----aCGUGCCaCGaaUGCCGACGCGc -3'
miRNA:   3'- ccuaaaGCACGG-GCaaGCGGUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.