Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28020 | 5' | -51.2 | NC_005887.1 | + | 28516 | 1.11 | 0.001682 |
|
Target: 5'- gGGAUUUCGUGCCCGUUCGCCAACACGc -3' miRNA: 3'- -CCUAAAGCACGGGCAAGCGGUUGUGC- -5' |
|||||||
| 28020 | 5' | -51.2 | NC_005887.1 | + | 28568 | 0.66 | 0.86115 |
|
Target: 5'- aGGcg-UCGccGCCCGcugCGCgGACGCGg -3' miRNA: 3'- -CCuaaAGCa-CGGGCaa-GCGgUUGUGC- -5' |
|||||||
| 28020 | 5' | -51.2 | NC_005887.1 | + | 31206 | 0.66 | 0.885452 |
|
Target: 5'- aGAUUUCGggcGCCgCGUgcuucaGCaCGACGCGa -3' miRNA: 3'- cCUAAAGCa--CGG-GCAag----CG-GUUGUGC- -5' |
|||||||
| 28020 | 5' | -51.2 | NC_005887.1 | + | 33051 | 0.7 | 0.687159 |
|
Target: 5'- cGGcGUUUCgGUGCCCGUaaccugcggcgUCGCCGugccgaccgccguGCACa -3' miRNA: 3'- -CC-UAAAG-CACGGGCA-----------AGCGGU-------------UGUGc -5' |
|||||||
| 28020 | 5' | -51.2 | NC_005887.1 | + | 34333 | 0.76 | 0.342372 |
|
Target: 5'- aGGGUUUUGUG-CCGUggCGCCGGcCACGg -3' miRNA: 3'- -CCUAAAGCACgGGCAa-GCGGUU-GUGC- -5' |
|||||||
| 28020 | 5' | -51.2 | NC_005887.1 | + | 35965 | 0.69 | 0.743617 |
|
Target: 5'- ----cUCGUGCCC-UUCGCCc-CGCGu -3' miRNA: 3'- ccuaaAGCACGGGcAAGCGGuuGUGC- -5' |
|||||||
| 28020 | 5' | -51.2 | NC_005887.1 | + | 37942 | 0.67 | 0.805882 |
|
Target: 5'- aGGAUcgcCGcGCCU--UCGCCGGCGCGc -3' miRNA: 3'- -CCUAaa-GCaCGGGcaAGCGGUUGUGC- -5' |
|||||||
| 28020 | 5' | -51.2 | NC_005887.1 | + | 38867 | 0.66 | 0.869518 |
|
Target: 5'- cGAcgUCGUGCUCGaUCaUCAGCGCGc -3' miRNA: 3'- cCUaaAGCACGGGCaAGcGGUUGUGC- -5' |
|||||||
| 28020 | 5' | -51.2 | NC_005887.1 | + | 39468 | 0.72 | 0.541163 |
|
Target: 5'- -----aCGUGUCCGUcgUCGCCuGCGCGu -3' miRNA: 3'- ccuaaaGCACGGGCA--AGCGGuUGUGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home