Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28022 | 3' | -48.9 | NC_005887.1 | + | 35542 | 0.66 | 0.957244 |
Target: 5'- aCGUaGCGccaGUCGcgcaGCGUGagGCCGAUGUCc- -3' miRNA: 3'- -GCA-CGU---UAGC----UGCAU--UGGCUACAGcu -5' |
|||||||
28022 | 3' | -48.9 | NC_005887.1 | + | 36729 | 0.66 | 0.952861 |
Target: 5'- uCGUGCGAaaCGAUGUuaaucguGCCGAUGcCGc -3' miRNA: 3'- -GCACGUUa-GCUGCAu------UGGCUACaGCu -5' |
|||||||
28022 | 3' | -48.9 | NC_005887.1 | + | 38220 | 0.67 | 0.913794 |
Target: 5'- gCGcGCAGccUUGcGCGUGGCCGGgaugGUCGAg -3' miRNA: 3'- -GCaCGUU--AGC-UGCAUUGGCUa---CAGCU- -5' |
|||||||
28022 | 3' | -48.9 | NC_005887.1 | + | 40843 | 0.67 | 0.937937 |
Target: 5'- uCGUGCAGUCGgauccaccgGCGaAGCCGccgcgcgcGUCGAa -3' miRNA: 3'- -GCACGUUAGC---------UGCaUUGGCua------CAGCU- -5' |
|||||||
28022 | 3' | -48.9 | NC_005887.1 | + | 41388 | 0.74 | 0.603265 |
Target: 5'- cCGUGCg--CGACGUGuucuccgacgauGCCGAgcagGUCGAa -3' miRNA: 3'- -GCACGuuaGCUGCAU------------UGGCUa---CAGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home