miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28024 3' -59.6 NC_005887.1 + 21035 0.68 0.32702
Target:  5'- uGCGGuCGGCgCGGugGGcGUGCCCgugaaugugGGCGa -3'
miRNA:   3'- -CGCC-GCUGaGCUugUC-CACGGG---------CCGU- -5'
28024 3' -59.6 NC_005887.1 + 33482 0.68 0.296648
Target:  5'- aCGGCGucgcgauCUCG-ACGGGcGCgCCGGCGu -3'
miRNA:   3'- cGCCGCu------GAGCuUGUCCaCG-GGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 26676 0.69 0.275339
Target:  5'- cGCGGCGG--UGAGCuGGUcgaGCUCGGCGc -3'
miRNA:   3'- -CGCCGCUgaGCUUGuCCA---CGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 11190 0.69 0.271227
Target:  5'- aGUGGCgcGACaCGAugguGCAGGcguaugcgcacggccUGCCCGGCAa -3'
miRNA:   3'- -CGCCG--CUGaGCU----UGUCC---------------ACGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 18093 0.69 0.268513
Target:  5'- cCGGCGACUCGccguGGcUGCugCCGGCAc -3'
miRNA:   3'- cGCCGCUGAGCuuguCC-ACG--GGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 26874 0.71 0.20222
Target:  5'- cGCGGCcaGCUCGAACGcgucuuGGUGCgCGGUc -3'
miRNA:   3'- -CGCCGc-UGAGCUUGU------CCACGgGCCGu -5'
28024 3' -59.6 NC_005887.1 + 26031 0.79 0.058032
Target:  5'- cGCGGCGAcCUCGAACAGG---CCGGCGu -3'
miRNA:   3'- -CGCCGCU-GAGCUUGUCCacgGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 11976 0.67 0.367281
Target:  5'- -aGGCGACgcCGAGC-GGUacaccgaGCUCGGCAu -3'
miRNA:   3'- cgCCGCUGa-GCUUGuCCA-------CGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 23441 0.67 0.368137
Target:  5'- uCGGUGAgCgcugCGGGCugccGGUGCCgGGCGa -3'
miRNA:   3'- cGCCGCU-Ga---GCUUGu---CCACGGgCCGU- -5'
28024 3' -59.6 NC_005887.1 + 35044 0.66 0.438054
Target:  5'- gGCGGCGACggacggCGAcacgacgacccacaGCGGGcgGCCgGGg- -3'
miRNA:   3'- -CGCCGCUGa-----GCU--------------UGUCCa-CGGgCCgu -5'
28024 3' -59.6 NC_005887.1 + 9151 0.66 0.431386
Target:  5'- uGCGGCGcguucaUCuGGACGGGcucGUCCGGCc -3'
miRNA:   3'- -CGCCGCug----AG-CUUGUCCa--CGGGCCGu -5'
28024 3' -59.6 NC_005887.1 + 15467 0.66 0.425717
Target:  5'- uCGGC-AUUUGAGgAacgcugguuccagucGGUGCCCGGCGg -3'
miRNA:   3'- cGCCGcUGAGCUUgU---------------CCACGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 23095 0.66 0.421963
Target:  5'- uCGGCGGCaccaagCGGuACAGGUGgagcaucgaaCCCGGUg -3'
miRNA:   3'- cGCCGCUGa-----GCU-UGUCCAC----------GGGCCGu -5'
28024 3' -59.6 NC_005887.1 + 5737 0.66 0.403496
Target:  5'- gGCGcGCGAUgcacUGAAacaaaAGGUGCgCGGCGu -3'
miRNA:   3'- -CGC-CGCUGa---GCUUg----UCCACGgGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 12585 0.67 0.385549
Target:  5'- cGCGGCGAUccucgCGAuCAGcucGCCgGGCAa -3'
miRNA:   3'- -CGCCGCUGa----GCUuGUCca-CGGgCCGU- -5'
28024 3' -59.6 NC_005887.1 + 32103 0.67 0.384665
Target:  5'- gGCGGCGGa-CGAucacccACAGGUcaucagacgcgccGUCCGGCGc -3'
miRNA:   3'- -CGCCGCUgaGCU------UGUCCA-------------CGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 5014 0.67 0.376775
Target:  5'- uGCGGCGAC-CGAugcCA-GUGC-CGGCGc -3'
miRNA:   3'- -CGCCGCUGaGCUu--GUcCACGgGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 27983 1.1 0.000253
Target:  5'- aGCGGCGACUCGAACAGGUGCCCGGCAc -3'
miRNA:   3'- -CGCCGCUGAGCUUGUCCACGGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.