miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28024 3' -59.6 NC_005887.1 + 23441 0.67 0.368137
Target:  5'- uCGGUGAgCgcugCGGGCugccGGUGCCgGGCGa -3'
miRNA:   3'- cGCCGCU-Ga---GCUUGu---CCACGGgCCGU- -5'
28024 3' -59.6 NC_005887.1 + 25494 0.78 0.061454
Target:  5'- aGCGGCGGCUCGGACGaugGCgCGGCGg -3'
miRNA:   3'- -CGCCGCUGAGCUUGUccaCGgGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 26031 0.79 0.058032
Target:  5'- cGCGGCGAcCUCGAACAGG---CCGGCGu -3'
miRNA:   3'- -CGCCGCU-GAGCUUGUCCacgGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 26095 0.72 0.181391
Target:  5'- cGCGGCGuuucaugGCgUCGAGCAGGaUGUCCuGCAc -3'
miRNA:   3'- -CGCCGC-------UG-AGCUUGUCC-ACGGGcCGU- -5'
28024 3' -59.6 NC_005887.1 + 26676 0.69 0.275339
Target:  5'- cGCGGCGG--UGAGCuGGUcgaGCUCGGCGc -3'
miRNA:   3'- -CGCCGCUgaGCUUGuCCA---CGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 26874 0.71 0.20222
Target:  5'- cGCGGCcaGCUCGAACGcgucuuGGUGCgCGGUc -3'
miRNA:   3'- -CGCCGc-UGAGCUUGU------CCACGgGCCGu -5'
28024 3' -59.6 NC_005887.1 + 27983 1.1 0.000253
Target:  5'- aGCGGCGACUCGAACAGGUGCCCGGCAc -3'
miRNA:   3'- -CGCCGCUGAGCUUGUCCACGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 30608 0.68 0.30403
Target:  5'- cGCGaGCaACUCGcGCAGcGcGUCCGGCAg -3'
miRNA:   3'- -CGC-CGcUGAGCuUGUC-CaCGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 32103 0.67 0.384665
Target:  5'- gGCGGCGGa-CGAucacccACAGGUcaucagacgcgccGUCCGGCGc -3'
miRNA:   3'- -CGCCGCUgaGCU------UGUCCA-------------CGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 33482 0.68 0.296648
Target:  5'- aCGGCGucgcgauCUCG-ACGGGcGCgCCGGCGu -3'
miRNA:   3'- cGCCGCu------GAGCuUGUCCaCG-GGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 33838 0.67 0.368137
Target:  5'- cGCGGCGA-UCGAacgcauGCAGGgcguacgaGCCugCGGCAg -3'
miRNA:   3'- -CGCCGCUgAGCU------UGUCCa-------CGG--GCCGU- -5'
28024 3' -59.6 NC_005887.1 + 34105 0.66 0.431385
Target:  5'- aGCGGUGACgcCGAGC----GCUCGGCAg -3'
miRNA:   3'- -CGCCGCUGa-GCUUGuccaCGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 35044 0.66 0.438054
Target:  5'- gGCGGCGACggacggCGAcacgacgacccacaGCGGGcgGCCgGGg- -3'
miRNA:   3'- -CGCCGCUGa-----GCU--------------UGUCCa-CGGgCCgu -5'
28024 3' -59.6 NC_005887.1 + 35340 0.72 0.177081
Target:  5'- cGCGGCGGCcggccaCGAGCuucacGCCCGGCAc -3'
miRNA:   3'- -CGCCGCUGa-----GCUUGucca-CGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 37571 0.66 0.44093
Target:  5'- uUGGCGGCUCGc---GGaGCCgCGGCGg -3'
miRNA:   3'- cGCCGCUGAGCuuguCCaCGG-GCCGU- -5'
28024 3' -59.6 NC_005887.1 + 41496 0.75 0.099496
Target:  5'- aUGGCaccGGCUCGAACGgcaagucgacGGUGCUCGGCAa -3'
miRNA:   3'- cGCCG---CUGAGCUUGU----------CCACGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 41597 0.69 0.275339
Target:  5'- aGCGGCGGCc----CAGGUGCggcggCCGGCGc -3'
miRNA:   3'- -CGCCGCUGagcuuGUCCACG-----GGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 41925 0.69 0.282303
Target:  5'- uGCuGaGCGGCUCGcAGCuGaGcUGCCCGGCGu -3'
miRNA:   3'- -CG-C-CGCUGAGC-UUGuC-C-ACGGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.